Crystal structure of Polyphosphate Kinase 2 from Deinococcus radiodurans in apo form
Silva, S.T.N., Romao, C.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
PPK2 domain-containing protein | 266 | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | Mutation(s): 0  Gene Names: DR_0132 EC: 2.7.4.1 | ||
UniProt | |||||
Find proteins for Q9RY20 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)) Explore Q9RY20  Go to UniProtKB:  Q9RY20 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9RY20 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 (Subject of Investigation/LOI) Query on PO4 | E [auth A], F [auth A], H [auth B], L [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
GOL Query on GOL | G [auth B], I [auth C], J [auth C], K [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 88.925 | α = 90 |
b = 78.605 | β = 109.207 |
c = 111.451 | γ = 90 |
Software Name | Purpose |
---|---|
Coot | model building |
PHENIX | refinement |
PHASER | phasing |
STARANISO | data scaling |
XDS | data reduction |
Funding Organization | Location | Grant Number |
---|---|---|
Fundacao para a Ciencia e a Tecnologia | Portugal | -- |