7BGD | pdb_00007bgd

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history. 

Literature

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus

Belinite, M., Khusainov, I., Soufari, H., Marzi, S., Romby, P., Yusupov, M., Hashem, Y.

(2021) Front Mol Biosci 8: 1022

Macromolecule Content 

  • Total Structure Weight: 688.72 kDa 
  • Atom Count: 35,364 
  • Modeled Residue Count: 2,538 
  • Deposited Residue Count: 3,135 
  • Unique protein chains: 12
  • Unique nucleic acid chains: 2

Macromolecules


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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S2C [auth b]255Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FZ25 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2FZ25 
Go to UniProtKB:  Q2FZ25
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UniProt GroupQ2FZ25
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S4D [auth d]200Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FXK6 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2FXK6 
Go to UniProtKB:  Q2FXK6
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UniProt GroupQ2FXK6
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S5E [auth e]166Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FW23 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FW23
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S6F [auth f]98Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2G113 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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UniProt GroupQ2G113
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S8G [auth h]132Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FW20 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FW20
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S11H [auth k]129Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FW31 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2FW31
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Reference Sequence
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S12I [auth l]137Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for P0A0H0 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Reference Sequence
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S15J [auth o]89Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2G2Q1 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Go to UniProtKB:  Q2G2Q1
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Reference Sequence
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S16K [auth p]91Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FZ45 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Reference Sequence
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S17L [auth q]87Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FW15 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
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Reference Sequence
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S18M [auth r]80Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2G111 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2G111 
Go to UniProtKB:  Q2G111
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Reference Sequence
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
30S ribosomal protein S20N [auth t]83Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
UniProt
Find proteins for Q2FXY6 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2FXY6 
Go to UniProtKB:  Q2FXY6
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UniProt GroupQ2FXY6
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Reference Sequence
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Entity ID: 1
MoleculeChains LengthOrganismImage
mRNA32Staphylococcus aureus subsp. aureus NCTC 8325
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Reference Sequence
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Entity ID: 2
MoleculeChains LengthOrganismImage
16S ribosomal RNAB [auth a]1,556Staphylococcus aureus subsp. aureus NCTC 8325
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Laboratories of Excellence (LabEx)FranceANR-10-LABX-0036 NETRNA
Agence Nationale de la Recherche (ANR)FranceANR-16-CE11-0007-01

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-08
    Type: Initial release
  • Version 1.1: 2024-07-10
    Changes: Data collection