7BFG | pdb_00007bfg

Circular permutant of ribosomal protein S6, P54-55 truncated, V37A mutant.

• PDB DOI: https://doi.org/10.2210/pdb7BFG/pdb

• Classification: RIBOSOMAL PROTEIN
• Organism(s): Thermus thermophilus HB8
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2021-01-02 Released: 2022-07-13 
• Deposition Author(s): Wang, H., Logan, D.T., Oliveberg, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free: 
  0.279 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.247 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.249 (Depositor) 

Starting Model: experimental

Literature

Circular permutant of ribosomal protein S6

Wang, H., Logan, D.T., Oliveberg, M.

To be published.

Biological Assembly 1  

Global Symmetry: Helical - H  (Explore in 3D)
Global Stoichiometry: Homo 12-mer - A12 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: microscopy

Macromolecule Content

• Total Structure Weight: 121.24 kDa 
• Atom Count: 8,558 
• Modelled Residue Count: 1,032 
• Deposited Residue Count: 1,032 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S6,30S ribosomal protein S6	A, B, C [auth J], D [auth K], E [auth L], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I]	86	Thermus thermophilus HB8	Mutation(s): 1  Gene Names: rpsF, TTHA0245
UniProt
Find proteins for Q5SLP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLP8  Go to UniProtKB:  Q5SLP8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free:  0.279 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.247 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.249 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.315	α = 90
b = 75.933	β = 90
c = 223.737	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2022-07-13 
Deposition Author(s): Wang, H., Logan, D.T., Oliveberg, M.

Revision History  

• Version 1.0: 2022-07-13
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Refinement description
• Version 1.2: 2024-11-13
  Changes: Structure summary