A conserved isoleucine in the RNA sensor RIG-I controls immune tolerance to mitochondrial RNA
de Regt, A.K., Anand, K., Gatterdam, K., Hagelueken, G., Hartmann, G., Geyer, M., Schlee, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Antiviral innate immune response receptor RIG-I | 127 | Homo sapiens | Mutation(s): 0  Gene Names: DDX58 EC: 3.6.4.13 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O95786 (Homo sapiens) Explore O95786  Go to UniProtKB:  O95786 | |||||
GTEx:  ENSG00000107201  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O95786 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3') | C, D, F [auth V] | 12 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | G [auth A], H [auth B], I [auth E], J [auth E], K [auth V] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 84.523 | α = 90 |
b = 135.126 | β = 90 |
c = 110.374 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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German Research Foundation (DFG) | Germany | EXC2151-390873048 |