7BA4 | pdb_00007ba4

Structure of Cystathionine gamma-lyase from Pseudomonas aeruginosa

• PDB DOI: https://doi.org/10.2210/pdb7BA4/pdb

• Classification: CYTOSOLIC PROTEIN
• Organism(s): Pseudomonas aeruginosa
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-12-15 Released: 2021-09-29 
• Deposition Author(s): Fernandez-Rodriguez, C., Oyenarte, I., Gonzalez-Recio, I., Majtan, T., Astegno, A., Martinez-Cruz, L.A.
• Funding Organization(s): Ministry of Economy and Competitiveness (MINECO)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.205 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.160 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.162 (Depositor) 

Starting Model: experimental

Literature

Structure of Cystathionine gamma-lyase from Pseudomonas aeruginosa

Fernandez-Rodriguez, C., Oyenarte, I., Gonzalez-Recio, I., Majtan, T., Astegno, A., Martinez-Cruz, L.A.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 175.65 kDa 
• Atom Count: 12,573 
• Modeled Residue Count: 1,471 
• Deposited Residue Count: 1,600 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cystathionine gamma-lyase	A, B, C, D	400	Pseudomonas aeruginosa	Mutation(s): 0  Gene Names: CGU42_31115, ECC04_012645, FC629_02215, GNQ48_07915, IPC582_10875 EC: 2.5.1.48
UniProt
Find proteins for A0A509J8D5 (Pseudomonas aeruginosa) Explore A0A509J8D5  Go to UniProtKB:  A0A509J8D5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PLP (Subject of Investigation/LOI)	E [auth A], F [auth B], G [auth C], H [auth D]	PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.205 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.160 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.162 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.304	α = 90
b = 79.304	β = 90
c = 446.668	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-09-29 
Deposition Author(s): Fernandez-Rodriguez, C., Oyenarte, I., Gonzalez-Recio, I., Majtan, T., Astegno, A., Martinez-Cruz, L.A.

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Funding Organization	Location	Grant Number
Ministry of Economy and Competitiveness (MINECO)	Spain	BFU2010-17857
Ministry of Economy and Competitiveness (MINECO)	Spain	PID2019-109055RB-I00
Ministry of Economy and Competitiveness (MINECO)	Spain	BFU2013-47531-R
Ministry of Economy and Competitiveness (MINECO)	Spain	BFU2016-77408-R

Revision History  

• Version 1.0: 2021-09-29
  Type: Initial release
  
• Version 1.1: 2022-02-23
  Changes: Database references, Structure summary
• Version 1.2: 2024-01-31
  Changes: Data collection, Refinement description