7B0U

Stressosome complex from Listeria innocua


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.86 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular insights into intra-complex signal transmission during stressosome activation.

Miksys, A.Fu, L.Madej, M.G.Guerreiro, D.N.Kaltwasser, S.Conway, M.Ejder, S.Bruckmann, A.Marles-Wright, J.Lewis, R.J.O'Byrne, C.Pane-Farre, J.Ziegler, C.

(2022) Commun Biol 5: 621-621

  • DOI: https://doi.org/10.1038/s42003-022-03549-9
  • Primary Citation of Related Structures:  
    7B0U

  • PubMed Abstract: 

    The stressosome is a pseudo-icosahedral megadalton bacterial stress-sensing protein complex consisting of several copies of two STAS-domain proteins, RsbR and RsbS, and the kinase RsbT. Upon perception of environmental stress multiple copies of RsbT are released from the surface of the stressosome. Free RsbT activates downstream proteins to elicit a global cellular response, such as the activation of the general stress response in Gram-positive bacteria. The molecular events triggering RsbT release from the stressosome surface remain poorly understood. Here we present the map of Listeria innocua RsbR1/RsbS complex at resolutions of 3.45 Å for the STAS domain core in icosahedral symmetry and of 3.87 Å for the STAS domain and N-terminal sensors in D2 symmetry, respectively. The structure reveals a conformational change in the STAS domain linked to phosphorylation in RsbR. Docking studies indicate that allosteric RsbT binding to the conformationally flexible N-terminal sensor domain of RsbR affects the affinity of RsbS towards RsbT. Our results bring to focus the molecular events within the stressosome complex and further our understanding of this ubiquitous signaling hub.


  • Organizational Affiliation

    Department of Biophysics II / Structural Biology, University of Regensburg, Regensburg, 93053, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR protein278Listeria innocua Clip11262Mutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q92DC6 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262))
Explore Q92DC6 
Go to UniProtKB:  Q92DC6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92DC6
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR protein278Listeria innocua Clip11262Mutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q92DC6 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262))
Explore Q92DC6 
Go to UniProtKB:  Q92DC6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92DC6
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
RsbS protein118Listeria innocua Clip11262Mutation(s): 0 
Gene Names: rsbS
UniProt
Find proteins for Q7AP18 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262))
Explore Q7AP18 
Go to UniProtKB:  Q7AP18
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7AP18
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR proteinDB [auth 3],
K [auth M],
OA [auth o],
Z
278Listeria innocua Clip11262Mutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q92DC6 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262))
Explore Q92DC6 
Go to UniProtKB:  Q92DC6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92DC6
Sequence Annotations
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR proteinCA [auth c],
GB [auth 6],
N [auth P],
RA [auth r]
278Listeria innocua Clip11262Mutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q92DC6 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262))
Explore Q92DC6 
Go to UniProtKB:  Q92DC6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92DC6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
TPO
Query on TPO
AB [auth 0]
B
CB [auth 2]
D
FA [auth f]
AB [auth 0],
B,
CB [auth 2],
D,
FA [auth f],
H,
HA [auth h],
J,
LA [auth l],
NA [auth n],
Q [auth L],
S,
UA [auth u],
W,
WA [auth w],
Y
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.86 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
RECONSTRUCTIONcryoSPARCV2
MODEL REFINEMENTPHENIX1.19rc5_4047

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
H2020 Marie Curie Actions of the European CommissionGermany721456

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-01
    Type: Initial release
  • Version 1.1: 2022-07-20
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Structure summary