7ANH | pdb_00007anh

DdhaC

PDB DOI: https://doi.org/10.2210/pdb7ANH/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Campylobacter jejuni
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-10-11 Released: 2020-10-21
Deposition Author(s): Naismith, J.H., Woodward, L.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free:
0.232 (Depositor), 0.240 (DCC)
R-Value Work:
0.190 (Depositor), 0.200 (DCC)
R-Value Observed:
0.193 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

DdhaC

Naismith, J.H., Woodward, L.

To be published.

Macromolecule Content

Total Structure Weight: 40.52 kDa
Atom Count: 2,897
Modeled Residue Count: 347
Deposited Residue Count: 353
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GDP-L-fucose synthase	A	353	Campylobacter jejuni	Mutation(s): 0 Gene Names: AY595_07840, B9Q63_05455, BB943_08725, D0W34_08630, D5I02_08530, DK813_08295, DQX79_06120, DW530_02880, F1P94_08750, FQZ47_07910... AY595_07840, B9Q63_05455, BB943_08725, D0W34_08630, D5I02_08530, DK813_08295, DQX79_06120, DW530_02880, F1P94_08750, FQZ47_07910, FRQ83_08390, FW031_08555, GAX04_08405, GRS20_08805, GSH24_04185, GY415_001379, GZD82_001462 EC: 1.1.1.271
UniProt
Find proteins for A0A5T1PRU5 (Campylobacter jejuni) Explore A0A5T1PRU5 Go to UniProtKB: A0A5T1PRU5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A5T1PRU5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.08 Å
R-Value Free: 0.232 (Depositor), 0.240 (DCC)
R-Value Work: 0.190 (Depositor), 0.200 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 131.801	α = 90
b = 131.801	β = 90
c = 50.17	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-10-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	100209/Z/12/Z)

Revision History (Full details and data files)

Version 1.0: 2020-10-21
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.