7ANC | pdb_00007anc

MlghC, GDP-mannoheptose C4 reductase from Campylobacter jejuni with NADP bound

• PDB DOI: https://doi.org/10.2210/pdb7ANC/pdb

• Classification: SUGAR BINDING PROTEIN
• Organism(s): Campylobacter jejuni
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-10-11 Released: 2020-10-21 
• Deposition Author(s): Naismith, J.H., Woodward, L.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free: 
  0.202 (Depositor), 0.213 (DCC) 
• R-Value Work: 
  0.173 (Depositor), 0.185 (DCC) 
• R-Value Observed: 
  0.174 (Depositor) 

Starting Model: experimental

Literature

MghlC

Naismith, J.H., Woodward, L.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 80.08 kDa 
• Atom Count: 5,702 
• Modeled Residue Count: 650 
• Deposited Residue Count: 690 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GDP-L-fucose synthase	A, B	345	Campylobacter jejuni	Mutation(s): 0  Gene Names:  fcl, A0Z41_07385, A4277_09460, B4O43_09695, B7M65_03500, BGG25_09085, BM409_09645, BM444_09020, BM513_08725, BSK70_08245, BSO22_09170, C1418_09205, CLC11_09615, CUT57_09340, D6H09_04540, DDV78_09315, DMN69_08810, DNA92_09025, DYU98_09465, E7P31_08700, E7R39_08755, EID41_09375, F0F26_01770, F0G48_09060, F0N28_08130, F0N82_00455, F1N65_08775, F1O83_08585, F6069_09545, F7N67_09870, F9736_08790, FJ686_08865, FLI41_08640, FM724_09175, FNW64_09505, FVI37_08605, FVM38_08200, FVN10_08680, FVY82_08620, FWZ78_00530, FXA21_08565, FXA45_08500, FY829_09130, FYZ21_00200, FZ860_03225, FZB49_04250, FZJ28_08760, FZL73_00555, GAU91_08635, GAX51_09535, GCY42_03575, GI310_08960, GLM81_05635, GLM94_08710, GPY87_09235, GS576_08295, GTQ72_08225, GV351_09045, GWW43_07690, GXS63_001732, GZD67_001693 EC: 1.1.1.271
UniProt
Find proteins for Q0P8I6 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q0P8I6  Go to UniProtKB:  Q0P8I6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP	C [auth A], D [auth B]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free:  0.202 (Depositor), 0.213 (DCC) 
• R-Value Work:  0.173 (Depositor), 0.185 (DCC) 
• R-Value Observed: 0.174 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.8	α = 90
b = 131.96	β = 105.84
c = 59.33	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2020-10-21 
Deposition Author(s): Naismith, J.H., Woodward, L.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	100209/Z/12/Z)

Revision History  

• Version 1.0: 2020-10-21
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Database references, Refinement description