7AN4

MlghB, GDP-mannoheptose C3,5 epimerase from Campylobacter jejuni complex with GDP-mannose

PDB DOI: https://doi.org/10.2210/pdb7AN4/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Campylobacter jejuni
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-10-10 Released: 2020-10-21
Deposition Author(s): Naismith, J.H., Woodward, L.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.234
R-Value Work: 0.211
R-Value Observed: 0.212

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

MghlB with GDP

Naismith, J.H., Woodward, L.

To be published.

Macromolecule Content

Total Structure Weight: 86.75 kDa
Atom Count: 5,978
Modelled Residue Count: 708
Deposited Residue Count: 728
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thymidine diphospho-4-keto-rhamnose 3,5-epimerase	A, B, C, D	182	Campylobacter jejuni	Mutation(s): 0 Gene Names: A0Z41_07375, A4277_09450, B4O43_09685, B7M65_03490, BGG25_09075, BM409_09635, BM444_09010, BM513_08715, BSK70_08235, BSO22_09160... A0Z41_07375, A4277_09450, B4O43_09685, B7M65_03490, BGG25_09075, BM409_09635, BM444_09010, BM513_08715, BSK70_08235, BSO22_09160, BZL95_08990, C1418_09190, CLC11_09605, CUT57_09155, D6H09_04530, DDO06_09345, DDV78_09325, DMN69_08700, DNA92_09015, DUY83_08160, DYU98_09455, E7P31_08690, E7R39_08745, EID41_09365, F0020_07730, F0E95_08655, F0F84_08705, F0F98_08535, F0G47_08120, F0G48_09050, F0N28_08120, F1N65_08765, F1O83_08575, F6069_09535, F7J52_08685, F7N67_09750, F9736_08800, FJ686_08855, FLI41_08630, FLR61_08490, FM724_09165, FNQ00_09015, FNW64_09490, FQX08_09165, FR479_08460, FVI37_08595, FVM38_08185, FVM79_08160, FVN10_08670, FVY82_08610, FVZ89_08655, FW037_08340, FW114_08530, FW212_08130, FW254_07800, FW615_08225, FW631_08740, FW892_08160, FW922_08210, FWA46_08455, FWB30_08765, FWZ78_00520, FXA21_08555, FXA45_08490, FY829_09115, FZJ28_08750, FZV74_08235, GAU91_08625, GAX51_09520, GCY42_03565, GI147_08930, GI310_08945, GLM94_08700, GPY87_09225, GQ373_08515, GS576_08280, GSX00_06480, GTI33_08365, GTQ72_08215, GV351_09030, GWW43_07680, GXS63_001730, GZD67_001691, VQ12_003125 EC: 5.1.3.13
UniProt
Find proteins for Q0P8I4 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q0P8I4 Go to UniProtKB: Q0P8I4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q0P8I4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GDP Query on GDP Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth B] SDF format, chain G [auth D] SDF format, chain H [auth D] MOL2 format, chain E [auth A] MOL2 format, chain F [auth B] MOL2 format, chain G [auth D] MOL2 format, chain H [auth D]	E [auth A], F [auth B], G [auth D], H [auth D]	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth D] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth D] Focus chain H [auth D]