7AC0 | pdb_00007ac0

Epoxide hydrolase CorEH without ligand

PDB DOI: https://doi.org/10.2210/pdb7AC0/pdb

Classification: HYDROLASE
Organism(s): Corynebacterium sp. C12
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-09-09 Released: 2021-07-21
Deposition Author(s): Palm, G.J., Lammers, M., Berndt, L.
Funding Organization(s): H2020 Marie Curie Actions of the European Commission

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.18 Å
R-Value Free:
0.226 (Depositor), 0.226 (DCC)
R-Value Work:
0.173 (Depositor), 0.173 (DCC)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Promiscuous Dehalogenase Activity of the Epoxide Hydrolase CorEH from Corynebacterium sp. C12

Schuiten, E.D., Badenhorst, C.P.S., Palm, G.J., Berndt, L., Lammers, M., Mican, J., Bednar, D., Damborsky, J., Bornscheuer, U.T.

(2021) ACS Catal 11: 6113-6120

DOI: https://doi.org/10.1021/acscatal.1c00851

Macromolecule Content

Total Structure Weight: 273.37 kDa
Atom Count: 19,262
Modeled Residue Count: 2,269
Deposited Residue Count: 2,432
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Soluble epoxide hydrolase	A [auth AAA] B [auth BBB] C [auth CCC] D [auth DDD] E [auth EEE] A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH]	304	Corynebacterium sp. C12	Mutation(s): 0 EC: 3.3.2.10
UniProt
Find proteins for O52866 (Corynebacterium sp. (strain C12)) Explore O52866 Go to UniProtKB: O52866
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O52866
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.18 Å
R-Value Free: 0.226 (Depositor), 0.226 (DCC)
R-Value Work: 0.173 (Depositor), 0.173 (DCC)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 140.016	α = 90
b = 156.57	β = 90
c = 112.581	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-07-21

Deposition Author(s):

Funding Organization	Location	Grant Number
H2020 Marie Curie Actions of the European Commission	European Union	722610

Revision History (Full details and data files)

Version 1.0: 2021-07-21
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.