6Z9R

Transcription termination intermediate complex 3

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase rho.

Said, N., Hilal, T., Sunday, N.D., Khatri, A., Burger, J., Mielke, T., Belogurov, G.A., Loll, B., Sen, R., Artsimovitch, I., Wahl, M.C.

(2021) Science 371

  • DOI: https://doi.org/10.1126/science.abd1673
  • Primary Citation of Related Structures:  
    6Z9P, 6Z9Q, 6Z9R, 6Z9S, 6Z9T, 7ADB, 7ADC, 7ADD, 7ADE

  • PubMed Abstract: 

    Factor-dependent transcription termination mechanisms are poorly understood. We determined a series of cryo-electron microscopy structures portraying the hexameric adenosine triphosphatase (ATPase) ρ on a pathway to terminating NusA/NusG-modified elongation complexes. An open ρ ring contacts NusA, NusG, and multiple regions of RNA polymerase, trapping and locally unwinding proximal upstream DNA. NusA wedges into the ρ ring, initially sequestering RNA. Upon deflection of distal upstream DNA over the RNA polymerase zinc-binding domain, NusA rotates underneath one capping ρ subunit, which subsequently captures RNA. After detachment of NusG and clamp opening, RNA polymerase loses its grip on the RNA:DNA hybrid and is inactivated. Our structural and functional analyses suggest that ρ, and other termination factors across life, may use analogous strategies to allosterically trap transcription complexes in a moribund state.

    • Organizational Affiliation: 

    Laboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.


Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusGA [auth G]181Escherichia coliMutation(s): 0 
Gene Names: 
nusG, A6592_25585, A6V01_22710, A8C65_22140, A9819_22730, A9P13_25180, A9R57_05240, A9X72_23950, AC067_25565, AC789_1c43770, ACN002_4069, ACN68_05355, ACN81_23140, ACU57_23215, ACU90_26230, AM270_23415, AM446_26285, AM464_13235, AML07_02765, AML35_27155, APT94_08685, APZ14_17375, ARC77_16990, AU473_00875, AUQ13_12310, AUS26_26490, AW059_24245, AW106_22725, AWB10_24980, AWG90_024840, AWP75_07120, B7C53_21495, B9M99_23250, B9T59_11605, BANRA_02652, BANRA_02965, BANRA_04868, BANRA_05054, BB545_03125, BE963_11245, BEN53_24665, BER14_24185, BHF03_13055, BHF46_22020, BHS81_23795, BHS87_22260, BIQ87_22825, BIU72_18845, BIZ41_20425, BJJ90_25150, BK248_06370, BK292_28055, BK296_22625, BK334_23885, BK373_27240, BK375_25285, BK383_27750, BMT91_03315, BN17_39461, BOH76_00570, BON63_20075, BON65_15050, BON66_14345, BON69_07640, BON71_08905, BON72_17240, BON75_02205, BON76_16185, BON83_01585, BON86_02250, BON87_25635, BON92_00555, BON94_22220, BON95_12895, BON96_11035, BTQ04_24460, BTQ06_27300, BUE81_05395, BvCms12BK_01423, BvCms2454_04763, BvCms28BK_04512, BvCms35BK_02101, BvCmsC61A_02144, BvCmsHHP001_05230, BvCmsHHP019_04457, BvCmsHHP056_02613, BvCmsKKP036_03586, BvCmsKKP061_02988, BvCmsKSNP073_02860, BvCmsKSNP081_04473, BvCmsKSNP120_03442, BvCmsKSP011_02762, BvCmsKSP024_02914, BvCmsKSP026_03368, BvCmsKSP045_04193, BvCmsKSP058_05150, BvCmsKSP067_02572, BvCmsKSP076_03394, BvCmsNSNP036_01151, BvCmsNSP006_02609, BvCmsNSP007_05025, BvCmsNSP047_00265, BvCmsNSP072_02887, BvCmsOUP014_03194, BvCmsSINP011_03926, BvCmsSINP022_04149, BvCmsSIP019_00806, BvCmsSIP044_03280, BVL39_05395, BW690_26720, BWI89_17415, BWP17_22740, BXT93_25190, BZL31_04420, BZL69_05760, C2M16_25145, C2U48_12750, C4M78_26060, C5715_03885, C5N07_24575, C5P01_26085, C5P44_24205, C6669_07630, C6B13_24055, C7235_23740, C7B02_25750, C7B06_24590, C7B07_24515, C7B08_25795, C7B18_24885, C9098_22125, C9114_22875, C9141_23580, C9160_23410, C9162_26315, C9201_22170, C9306_18330, C9E25_22050, C9E67_28690, C9Z03_20290, C9Z23_22460, C9Z28_21960, C9Z29_22205, C9Z37_20890, C9Z39_11545, C9Z68_22005, C9Z70_22895, C9Z78_23210, C9Z89_21250, CA593_06055, CDC27_21525, CDL37_18180, CF006_23900, CG692_19490, CI641_013295, CI693_09880, CI694_22430, CIG45_23855, CJU63_23510, CMR93_21685, CO706_19475, COD30_25685, COD46_23680, CQB02_21475, CQP61_26065, CR538_24245, CR539_01640, CRD98_23200, CRE06_24015, CRM83_18660, CRX46_23015, CSB64_25615, CV83915_02071, CVH05_03840, CWM24_27465, CWS33_24585, D0X26_26090, D2184_25125, D2185_24315, D2188_26625, D3821_09130, D3822_07045, D3O91_23455, D3P01_24300, D3Y67_18010, D4M06_24755, D4V08_22465, D6T60_24420, D6X76_25425, D7K63_24265, D7K66_23575, D9D20_23600, D9D31_17400, D9D43_22285, D9E34_21740, D9E35_23840, D9F17_24210, D9G11_22910, D9G42_23575, D9G48_16785, D9H36_23700, D9H53_22650, D9H68_20300, D9H70_22035, D9H94_18920, D9I18_21340, D9I87_21115, D9I88_18975, D9I97_19355, D9J03_21550, D9J11_22250, D9J44_24490, D9J60_24680, D9J78_24465, D9K48_24855, D9K54_12200, D9L89_22830, D9X97_23540, DAH18_24890, DAH26_25975, DAH30_23810, DAH32_23215, DAH34_21590, DAH37_22535, DAH43_24845, DB359_25595, DBQ99_24575, DD762_22315, DEN86_24465, DEN89_26545, DEN97_23745, DEO04_24340, DEO19_24590, DIV22_03710, DJ492_21155, DJ503_21480, DL455_22945, DL545_23715, DL800_27635, DM102_24845, DM129_21405, DMI04_23160, DN627_23120, DN700_22935, DNB37_22335, DND16_22055, DNQ45_05150, DNX30_24180, DOY56_23490, DP258_23400, DP277_21350, DQE83_24500, DQF57_23755, DQO13_23745, DS732_01515, DTL43_13735, DTL90_24565, DTM10_25890, DTM45_24265, DU309_24235, DU321_23455, DWB25_23615, DXT69_22770, DXT71_22275, DXT73_22975, DXX80_014070, E0I42_21930, E0K84_22915, E0L12_22075, E2112_20390, E2115_21525, E2116_21360, E2119_22370, E2127_20870, E2128_03155, E2129_21325, E2134_22760, E2135_19300, E2855_04995, E2863_04087, E4K55_23315, E5P22_12620, E5P28_08855, E5P37_21480, E5S42_21570, E5S46_22920, E5S47_23055, E5S58_21655, E5S61_22405, EA223_18780, EAI42_07555, EAI46_11730, EAI52_22765, EAX79_24725, EB509_19910, EB510_23015, EB515_23215, EC1094V2_4288, EC3234A_76c00020, EC3426_00293, EC382_20035, EC95NR1_03447, ECONIH1_23440, ECs4905, ECTO6_04524, ED225_22815, ED600_17570, ED607_18465, ED611_23905, ED648_18875, ED903_15555, ED944_23285, EEA45_21070, EEP23_09520, EF173_24425, EHH55_00685, EHJ36_22675, EI021_22100, EI028_22550, EI032_21280, EIA08_23380, EIA21_22555, EIZ93_16305, EJC75_19605, EKI52_13975, EL75_4207, EL79_4413, EL80_4320, ELT20_20690, ELT49_22095, ELT58_20800, ELU85_23620, ELV08_18720, ELV15_18010, ELV28_22220, ELY05_18135, EO241_25805, EPT01_21710, EPU41_22430, EQ820_22900, EQ823_21595, EQ825_24495, EQ830_22075, ERL57_22710, ERS085365_04268, ERS085366_03833, ERS085374_04594, ERS085379_04702, ERS085386_04623, ERS085404_04521, ERS085416_04255, ERS139211_00029, ERS150873_04413, ERS150876_04842, EST51_23890, EVY14_16870, EXM29_02430, ExPECSC019_03691, ExPECSC038_04333, EXX06_24555, EXX13_24135, EXX23_22335, EXX24_23200, EXX53_20975, EXX55_24470, EXX71_22285, EXX78_23980, EXX87_25010, EYD11_21620, EYX82_16660, EYY27_22340, EYY34_19835, EYY78_22630, F1E13_23780, F1E19_21855, F7F18_24025, F7F23_23365, F7F29_25900, F7G01_23380, F7G03_24045, FAF34_028990, FKO60_24845, FNJ69_19080, FNJ83_24770, FORC82_4527, FQ915_26180, FQR64_21830, FRV13_16245, FV293_23400, FV295_22235, FV438_22405, FWK02_12320, FY127_17780, FZ043_01110, GJ11_25170, HmCms184_03867, HmCmsJML074_03188, HmCmsJML079_04908, HmCmsJML204_03263, HMPREF3040_01771, HW43_01555, MJ49_09455, MS6198_46010, NCTC10082_02087, NCTC10090_02786, NCTC10429_00094, NCTC10764_02978, NCTC10766_02647, NCTC10865_05901, NCTC10974_05357, NCTC11022_04295, NCTC11112_02275, NCTC11126_05446, NCTC11181_01971, NCTC11341_02768, NCTC12950_05220, NCTC13127_06170, NCTC13148_04401, NCTC13846_04507, NCTC7922_04992, NCTC7927_05255, NCTC8009_08439, NCTC8179_05103, NCTC8450_00357, NCTC8500_05331, NCTC8622_01622, NCTC8960_02346, NCTC9007_05346, NCTC9036_04655, NCTC9044_02298, NCTC9045_05548, NCTC9050_02824, NCTC9055_01673, NCTC9058_02141, NCTC9062_03438, NCTC9077_05942, NCTC9111_04961, NCTC9117_05910, NCTC9119_05061, NCTC9701_05002, NCTC9702_05645, NCTC9703_04220, NCTC9706_02009, NCTC9777_01124, NCTC9969_04938, PGD_00616, PU06_15460, RG28_25315, RK56_017435, RX35_03749, SAMEA3472043_04873, SAMEA3472044_04880, SAMEA3472047_03493, SAMEA3472055_04940, SAMEA3472056_05316, SAMEA3472070_05100, SAMEA3472080_04808, SAMEA3472090_05013, SAMEA3472108_04978, SAMEA3472110_05075, SAMEA3472112_05160, SAMEA3472114_04960, SAMEA3472147_04113, SAMEA3484427_04977, SAMEA3484429_04980, SAMEA3484434_04732, SAMEA3485101_05504, SAMEA3485113_04488, SAMEA3752372_05072, SAMEA3752553_04898, SAMEA3752557_04837, SAMEA3752559_04862, SAMEA3752620_04706, SAMEA3753064_05336, SAMEA3753097_04838, SAMEA3753164_04793, SAMEA3753290_00011, SAMEA3753300_04891, SK85_04313, UC41_25620, UN86_14210, UN91_25475, WQ89_24645, WR15_01460, YDC107_2696

UniProt
Find proteins for P0AFG0 (Escherichia coli (strain K12))
Explore P0AFG0 
Go to UniProtKB:  P0AFG0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AFG0
Sequence Annotations
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination factor Rho419Escherichia coliMutation(s): 0 
Gene Names: rho, AC789_1c41660, ACN002_3874, EL75_4398, EL79_4648, EL80_4555
EC: 3.6.4
UniProt
Find proteins for P0AG30 (Escherichia coli (strain K12))
Explore P0AG30 
Go to UniProtKB:  P0AG30
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AG30
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusAH [auth A]497Escherichia coliMutation(s): 0 
Gene Names: 
nusA, A6581_13525, A8C65_02280, A9819_18195, A9R57_12710, A9X72_02950, AC789_1c35390, ACN002_3262, ACN68_12470, ACN81_18560, ACU57_14555, ACU90_11675, AJ318_05130, AM270_15620, AM464_08470, AM465_07745, AMK83_06450, AML35_13995, ARC77_12295, AU473_05845, AUQ13_02965, AW059_15285, AWB10_02965, AWE53_007755, AWF59_011800, AWG78_015835, AZZ83_001443, B6V57_17910, B7C53_06460, B9N33_16970, BANRA_01789, BANRA_03826, BB545_09890, BFD68_02465, BHF03_08610, BHF46_07205, BHS87_17855, BIQ87_17925, BIU72_05295, BIZ41_14490, BJJ90_02880, BK373_10285, BK375_17175, BK383_15855, BMT91_09130, BN17_31141, BOH76_04800, BON63_14350, BON65_19800, BON66_12095, BON69_26670, BON71_25285, BON72_14050, BON75_23260, BON76_05640, BON94_12450, BON95_22130, BON96_06470, BTQ04_16590, BTQ06_11760, BUE81_19575, BvCms12BK_01027, BvCms2454_04844, BvCms28BK_03352, BvCms35BK_01521, BvCmsC61A_01481, BvCmsHHP001_01224, BvCmsHHP019_03131, BvCmsHHP056_02506, BvCmsKKP036_00266, BvCmsKKP061_00866, BvCmsKSNP073_02140, BvCmsKSNP081_00264, BvCmsKSNP120_03552, BvCmsKSP011_02072, BvCmsKSP024_00305, BvCmsKSP026_00480, BvCmsKSP045_01628, BvCmsKSP058_01862, BvCmsKSP067_01442, BvCmsKSP076_01608, BvCmsNSNP036_02129, BvCmsNSP006_04618, BvCmsNSP007_02229, BvCmsNSP047_04140, BvCmsOUP014_03610, BvCmsSINP011_04480, BvCmsSINP022_03541, BvCmsSIP019_00385, BvCmsSIP044_00115, BW690_05715, BWI89_22180, BWP17_10040, BXT93_11865, BZL31_05810, C2U48_17660, C4K41_03670, C5N07_18180, C5P44_00540, C7B06_16690, C7B07_10710, C9098_07900, C9114_15345, C9162_04220, C9E25_11380, C9E67_03485, C9Z23_02315, C9Z28_00495, C9Z29_07080, C9Z37_14770, C9Z39_14385, C9Z69_11065, C9Z70_06875, C9Z78_03425, CCZ14_12145, CCZ17_15255, CF006_16780, CG692_07185, CI693_03560, CI694_20950, CIG45_16160, CMR93_08950, CO706_14520, COD46_10645, CR538_03185, CR539_21135, CRD98_04825, CRM83_23610, CRT43_19205, CT146_02945, CUB99_16245, CVH05_10890, D2184_10395, D2185_00555, D3821_08435, D3C88_08620, D3O91_07735, D3Y67_18400, D4M06_11115, D6X76_04225, D7K63_12110, D7Y10_03480, D9D20_06165, D9D31_09845, D9D33_00520, D9E34_10725, D9E35_01735, D9E49_09485, D9F17_07090, D9G42_16790, D9H53_01085, D9H68_07450, D9H70_01530, D9I18_07065, D9I87_04950, D9I88_16540, D9I97_11390, D9J11_01020, D9J44_07740, D9J46_20540, D9J78_05020, D9K54_17930, D9L99_02550, DAH26_17205, DAH30_12985, DAH34_01870, DAH37_04365, DAH43_16670, DD762_19130, DEN89_09295, DEN97_16025, DEO04_19495, DEO19_06320, DJ487_12875, DJ503_10865, DL455_12590, DL545_03770, DMI04_04160, DMZ50_12310, DN627_01240, DN700_04485, DNB37_13595, DNR41_11075, DOY56_12135, DP258_01950, DQF57_03505, DQO13_01185, DS732_23585, DS966_19180, DTL43_04185, DTL90_07460, DTM10_07095, DU333_16810, DW236_11975, DXT69_05630, DXT71_00550, DXT73_13270, DXX80_009480, E0I42_14230, E0L04_19775, E2119_05760, E2127_02465, E2128_02605, E2129_05650, E2134_15705, E2135_07970, E5P22_12885, E5P28_13020, E5P37_13245, E5S42_11905, E5S47_02870, E5S61_05815, EA223_04935, EA250_06525, EA834_14925, EAI42_15045, EAI52_10000, EAX79_13120, EB509_07090, EB510_12295, EC1094V2_475, EC3234A_53c00480, EC382_14545, ECs4050, ECTO124_00620, ECTO6_00587, ED225_04160, ED607_10315, ED611_04170, ED648_02805, EF173_16895, EGT48_12340, EI021_03955, EI028_15160, EI032_08695, EIA21_02770, EIZ93_15765, EL75_0516, EL79_0538, EL80_0529, ELT20_05155, ELT23_06875, ELT33_08795, ELT34_10430, ELT48_07010, ELU82_09405, ELU96_15075, ELV05_02165, ELV13_06455, ELV24_06465, ELX79_02850, ELX83_01985, ELY05_03160, ELY23_12925, ELY24_06185, ELY50_10980, EO241_09470, EPS76_01475, EPS94_08345, EPT01_00525, EQ825_16425, ERS085365_00562, ERS085374_01906, ERS085379_00395, ERS085383_00719, ERS085386_00510, ERS085404_02209, ERS085406_02909, ERS085416_00332, ERS139211_00573, ERS150873_04324, EWK56_02885, EXM29_19885, ExPECSC065_00153, EXX06_09580, EXX13_07225, EXX55_08945, EXX71_13290, EXX78_16840, EXX87_04480, EYD11_02755, EYX82_02345, EYX99_26665, EYY34_08675, F1E19_22155, F7F18_01095, F7G01_14090, F7G03_16260, FKO60_06130, FNJ67_03685, FORC82_0590, FQ915_16570, FQR64_03145, FQU83_04620, FRV13_20655, FV293_08485, FV438_11000, FY127_14855, FZ043_21925, HmCms184_00231, HmCmsJML079_04422, HmCmsJML146_01153, HmCmsJML204_02228, HW43_20805, MJ49_14455, MS8345_03518, NCTC10089_00629, NCTC10090_03662, NCTC10767_01660, NCTC10865_00813, NCTC10974_00712, NCTC11022_03334, NCTC11126_02933, NCTC11341_01740, NCTC13127_00931, NCTC8179_06097, NCTC8621_00649, NCTC8959_03134, NCTC9045_00717, NCTC9055_02514, NCTC9058_01244, NCTC9062_02552, NCTC9075_00900, NCTC9081_01077, NCTC9111_00998, NCTC9119_00655, NCTC9434_00566, NCTC9701_00709, NCTC9703_05100, NCTC9706_02868, NCTC9969_00791, PGD_03947, PU06_19960, RG28_20965, RK56_014720, RX35_04256, SAMEA3472044_03332, SAMEA3472047_01872, SAMEA3472055_00400, SAMEA3472056_03072, SAMEA3472080_00945, SAMEA3472090_00548, SAMEA3472108_00102, SAMEA3472114_00483, SAMEA3472147_01878, SAMEA3485101_01710, SAMEA3752553_01187, SAMEA3752557_01875, SAMEA3752559_03273, SAMEA3752620_02341, SAMEA3753064_02936, SAMEA3753097_03302, SAMEA3753164_02300, SAMEA3753290_00148, SAMEA3753300_02131, SK85_03482, SY51_18275, U12A_03405, U14A_03402, UC41_24435, UN86_15490, UN91_15505, WQ89_06750, WR15_24550

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Find proteins for P0AFF6 (Escherichia coli (strain K12))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alphaI [auth U],
J [auth V]		329Escherichia coliMutation(s): 0 
Gene Names: rpoA, pez, phs, sez, b3295, JW3257
EC: 2.7.7.6
UniProt
Find proteins for P0A7Z4 (Escherichia coli (strain K12))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit omegaK [auth W]91Escherichia coliMutation(s): 0 
Gene Names: rpoZ, b3649, JW3624
EC: 2.7.7.6
UniProt
Find proteins for P0A800 (Escherichia coli (strain K12))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaL [auth X]1,342Escherichia coliMutation(s): 0 
Gene Names: rpoB, Z5560, ECs4910
EC: 2.7.7.6
UniProt
Find proteins for P0A8V2 (Escherichia coli (strain K12))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta'M [auth Y]1,416Escherichia coliMutation(s): 0 
Gene Names: 
rpoC, A6581_23995, A6592_25550, A6V01_22675, A8C65_22170, A9P13_25145, A9R57_05210, A9X72_23915, AC789_1c43830, ACN002_4075, ACN68_05320, ACN81_23175, ACU57_23185, ACU90_26200, AM270_23445, AM446_26250, AM464_13270, AMK83_15405, AML07_02735, AML35_27125, APT94_08715, APZ14_17345, ARC77_17020, AU473_00845, AUQ13_12340, AUS26_26460, AW059_24210, AWB10_24945, AWE53_003330, AWG90_024870, AZZ83_004736, B7C53_21460, B9M99_23215, BANRA_02658, BANRA_02959, BANRA_04874, BANRA_05060, BB545_03160, BE963_11280, BHF03_13085, BHF46_21990, BHS81_23830, BHS87_22295, BIQ87_22860, BIU72_18810, BIZ41_20460, BJJ90_25120, BK292_28025, BK296_22655, BK373_27210, BK375_25315, BK383_27720, BMT49_21005, BMT91_03285, BN17_39521, BOH76_00535, BON63_20110, BON65_15085, BON66_14380, BON69_07675, BON71_08940, BON72_17275, BON75_02240, BON76_16220, BON83_01620, BON87_25670, BON91_27070, BON92_00590, BON94_22185, BON95_12860, BON96_11000, BTQ04_24495, BTQ06_27265, BUE81_05360, BvCms12BK_01429, BvCms2454_04769, BvCms28BK_04518, BvCms35BK_02095, BvCmsC61A_02150, BvCmsHHP001_05236, BvCmsHHP019_04451, BvCmsHHP056_02607, BvCmsKKP061_02982, BvCmsKSNP073_02854, BvCmsKSNP081_04479, BvCmsKSNP120_03436, BvCmsKSP011_02756, BvCmsKSP024_02908, BvCmsKSP026_03362, BvCmsKSP045_04187, BvCmsKSP058_05144, BvCmsKSP067_02566, BvCmsNSNP036_01157, BvCmsNSP006_02615, BvCmsNSP007_05019, BvCmsNSP047_00271, BvCmsNSP072_02893, BvCmsOUP014_03200, BvCmsSINP011_03932, BvCmsSINP022_04155, BvCmsSIP019_00812, BvCmsSIP044_03274, BVL39_05360, BW690_26755, BWI89_17380, BWP17_22705, BXT93_12730, BZL31_04385, BZL69_05725, C2U48_12715, C5715_03850, C5N07_24540, C5P01_26050, C5P44_24170, C7235_23705, C7B02_25785, C7B06_24625, C7B07_24550, C7B08_25760, C9098_22155, C9114_22905, C9141_23610, C9160_23380, C9162_26345, C9201_22200, C9306_18300, C9E25_22085, C9E67_28655, C9Z03_20320, C9Z23_22490, C9Z28_21990, C9Z29_22175, C9Z37_20920, C9Z39_11515, C9Z43_22460, C9Z69_21605, C9Z70_22865, CA593_06020, CDC27_21560, CF006_23865, CI641_013325, CI693_09915, CI694_22465, CIG45_23820, CJU63_23545, CMR93_21720, CO706_19510, COD30_25650, COD46_23645, CR538_24210, CR539_01675, CRD98_23235, CRE06_23980, CRM83_18625, CRX46_23050, CV83915_02065, CVH05_03875, CWS33_24550, D0X26_26125, D2184_25090, D2185_24280, D2188_26590, D3821_09095, D3822_07080, D3O91_23490, D3P01_24335, D3Y67_18045, D4M06_24790, D6T60_24455, D6X76_25460, D7K63_24300, D7K66_23610, D9D20_23630, D9D31_17430, D9D43_22315, D9E34_21770, D9E35_23870, D9F17_24240, D9G48_16815, D9H53_22620, D9H68_20330, D9H70_22065, D9H94_18950, D9I18_21370, D9I87_21145, D9I88_19005, D9I97_19385, D9J03_21580, D9J11_22220, D9J44_24520, D9J60_24650, D9J78_24495, D9K48_24885, D9L89_22865, D9X97_23575, DAH18_24925, DAH26_25940, DAH30_23845, DAH34_21555, DAH37_22570, DAH43_24880, DBQ99_24540, DD762_22280, DEN89_26510, DEN97_23710, DEO04_24305, DEO19_24555, DIV22_03745, DJ487_24740, DJ503_21515, DL455_22980, DL545_23680, DLW88_24480, DM102_24810, DMI04_23195, DN627_23155, DN700_22970, DNB37_22370, DND16_22020, DOY56_23525, DP258_23435, DP277_21385, DQE83_24465, DQF57_23790, DQO13_23780, DTL43_13700, DTL90_24530, DTM10_25855, DU309_24205, DU321_23425, DW236_24545, DXT69_22805, DXT71_22310, DXT73_22940, DXX80_014100, E0I42_21900, E0K84_22885, E0L12_22045, E2112_20360, E2119_22340, E2127_20900, E2128_03185, E2129_21295, E2134_22790, E2135_19330, E4K55_23345, E5P22_12650, E5P28_08825, E5P37_21450, E5S42_21540, E5S47_23025, E5S58_21685, E5S61_22375, EA223_18745, EA410_23470, EAI42_07590, EAI46_11695, EAI52_22800, EAX79_24760, EB509_19940, EB510_23045, EB515_23245, EC1094V2_4282, EC3234A_76c00080, EC3426_00300, EC382_20005, ECs4911, ECTO6_04517, ED225_22845, ED607_18495, ED611_23935, ED648_18905, ED903_15585, ED944_23315, EEA45_21100, EEP23_09490, EF173_24455, EHH55_00715, EHJ36_22705, EI021_22070, EI028_22520, EI032_21250, EIA21_22525, EIZ93_16335, EJC75_19635, EL75_4201, EL79_4407, EL80_4314, ELT20_20720, ELT23_22660, ELU85_23590, ELV08_18690, ELV28_22250, ELY05_18165, EO241_25775, EPT01_21680, EQ820_22870, EQ823_21565, ERS085365_04275, ERS085366_03840, ERS085374_04587, ERS085379_04695, ERS085383_04736, ERS085386_04630, ERS085404_04514, ERS085416_04248, ERS139211_00022, ERS150873_04406, ERS150876_04849, EST51_23860, EVY14_16840, EXM29_02400, EXX06_24525, EXX23_22305, EXX24_23170, EXX53_21005, EXX55_24440, EXX71_22255, EXX78_24010, EXX87_24980, EYD11_21590, EYX82_16690, EYY34_19805, EYY78_22660, F1E13_23750, F1E19_21825, F7F11_23815, F7F18_24055, F7F29_25930, F7G01_23350, F7G03_24075, FAF34_028960, FNJ69_19110, FNJ83_24800, FORC82_4521, FQ915_26150, FQR64_21800, FRV13_16215, FV293_23430, FV438_22435, FWK02_01680, FY127_17750, FZ043_01140, GJ11_25200, HmCms184_03861, HmCmsJML074_03182, HmCmsJML079_04902, HmCmsJML204_03257, HMPREF3040_01778, HW43_01585, MJ49_09425, NCTC10082_02080, NCTC10090_02779, NCTC10429_00081, NCTC10865_05894, NCTC10974_05350, NCTC11181_01964, NCTC12950_05213, NCTC13127_06163, NCTC13148_04414, NCTC7927_05248, NCTC8500_05324, NCTC8960_02339, NCTC9036_04648, NCTC9044_02305, NCTC9045_05541, NCTC9050_02817, NCTC9055_01666, NCTC9058_02148, NCTC9062_03445, NCTC9077_05932, NCTC9111_04954, NCTC9119_05054, NCTC9701_04995, NCTC9706_02002, NCTC9777_01117, NCTC9969_04931, PGD_00622, PU06_15490, RG28_25345, RK56_017400, RX35_03755, SAMEA3472043_04866, SAMEA3472044_04873, SAMEA3472047_03500, SAMEA3472055_04947, SAMEA3472056_05309, SAMEA3472070_05093, SAMEA3472080_04815, SAMEA3472090_05006, SAMEA3472108_04971, SAMEA3472110_05082, SAMEA3472112_05167, SAMEA3472114_04967, SAMEA3472147_04120, SAMEA3484427_04984, SAMEA3484429_04987, SAMEA3484434_04725, SAMEA3485101_05497, SAMEA3485113_04495, SAMEA3752372_05079, SAMEA3752553_04905, SAMEA3752557_04844, SAMEA3752559_04855, SAMEA3752620_04699, SAMEA3753064_05329, SAMEA3753097_04845, SAMEA3753164_04786, SAMEA3753290_00018, SAMEA3753300_04884, SK85_04319, UC41_25650, UN86_14180, UN91_25445, WQ89_24675, WR15_01490, YDC107_2702

EC: 2.7.7.6
UniProt
Find proteins for P0A8T7 (Escherichia coli (strain K12))
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Entity ID: 8
MoleculeChains LengthOrganismImage
non template strandN [auth K]50synthetic construct
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Entity ID: 9
MoleculeChains LengthOrganismImage
template strandO [auth L]50synthetic construct
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Entity ID: 10
MoleculeChains LengthOrganismImage
rut RNAP [auth R]99synthetic construct
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Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP
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CA [auth e],
Q [auth a],
T [auth b],
W [auth c],
Z [auth d]		ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
DG
Query on DG
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IA [auth L]2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O7 P
LTFMZDNNPPEQNG-KVQBGUIXSA-N
BEF
Query on BEF
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BA [auth d],
EA [auth e],
S [auth a],
V [auth b],
Y [auth c]		BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
ZN
Query on ZN
Download Ideal Coordinates CCD File 
GA [auth Y],
HA [auth Y]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AA [auth d]
DA [auth e]
FA [auth Y]
R [auth a]
U [auth b]
AA [auth d],
DA [auth e],
FA [auth Y],
R [auth a],
U [auth b],
X [auth c]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC2.14

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyRTG 2473-1
German Research Foundation (DFG)GermanyWA 1126/11-1
German Federal Ministry for Education and ResearchGermany01DQ20006

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-04
    Type: Initial release
  • Version 1.1: 2021-02-03
    Changes: Database references