6Z0E | pdb_00006z0e

HtrA1 inactive protease domain S328A with CARASIL mutation R274Q

PDB DOI: https://doi.org/10.2210/pdb6Z0E/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-05-08 Released: 2021-05-19
Deposition Author(s): Vetter, I.R., Stege, P., Ingendahl, L., Ehrmann, M.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.265 (Depositor), 0.267 (DCC)
R-Value Work:
0.238 (Depositor), 0.240 (DCC)
R-Value Observed:
0.239 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Repair strategies addressing pathogenic protein conformations

Ingendahl, L., Beaufort, N., Kuszner, M., Vetter, I.R., Stege, P., Ruiz-Blanco, Y.B., Bravo-Rodriguez, K., Beuck, C., Schillinger, J., Rey, J., Roberti, A., Hagemeier, B., Hu, X.-Y., Clausen, T., Sanchez-Garcia, E., Schmuck, C., Dichgans, M., Ehrmann, M.

To be published.

Macromolecule Content

Total Structure Weight: 51.31 kDa
Atom Count: 2,961
Modeled Residue Count: 384
Deposited Residue Count: 472
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine protease HTRA1	A, B	236	Homo sapiens	Mutation(s): 2 Gene Names: HTRA1, HTRA, PRSS11 EC: 3.4.21
UniProt & NIH Common Fund Data Resources
Find proteins for Q92743 (Homo sapiens) Explore Q92743 Go to UniProtKB: Q92743
PHAROS: Q92743 GTEx: ENSG00000166033
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92743
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth A] MOL2 format, chain D [auth B] MOL2 format, chain C [auth A] mmCIF format, chain D [auth B] mmCIF format, chain C [auth A]	C [auth A], D [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.265 (Depositor), 0.267 (DCC)
R-Value Work: 0.238 (Depositor), 0.240 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.86	α = 90
b = 109.86	β = 90
c = 114.4	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-05-19

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	CRC1093

Revision History (Full details and data files)

Version 1.0: 2021-05-19
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.