6YW8

NMR solution structure of unbound recombinant human Nerve Growth Factor (rhNGF)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Endogenous modulators of neurotrophin signaling: Landscape of the transient ATP-NGF interactions.

Paoletti, F.Merzel, F.Cassetta, A.Ogris, I.Covaceuszach, S.Grdadolnik, J.Lamba, D.Golic Grdadolnik, S.

(2021) Comput Struct Biotechnol J 19: 2938-2949

  • DOI: https://doi.org/10.1016/j.csbj.2021.05.009
  • Primary Citation of Related Structures:  
    6YW8

  • PubMed Abstract: 

    The Nerve Growth Factor (NGF) neurotrophin acts in the maintenance and growth of neuronal populations. Despite the detailed knowledge of NGF's role in neuron physiology, the structural and mechanistic determinants of NGF bioactivity modulated by essential endogenous ligands are still lacking. We present the results of an integrated structural and advanced computational approach to characterize the extracellular ATP-NGF interaction. We mapped by NMR the interacting surface and ATP orientation on NGF and revealed the functional role of this interaction in the binding to TrkA and p75 NTR receptors by SPR. The role of divalent ions was explored in conjunction with ATP. Our results pinpoint ATP as a likely transient molecular modulator of NGF signaling, in health and disease states.


  • Organizational Affiliation

    Laboratory for Molecular Structural Dynamics, Theory Department, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-nerve growth factor
A, B
118Homo sapiensMutation(s): 0 
Gene Names: NGFNGFB
UniProt & NIH Common Fund Data Resources
Find proteins for P01138 (Homo sapiens)
Explore P01138 
Go to UniProtKB:  P01138
PHAROS:  P01138
GTEx:  ENSG00000134259 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01138
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Slovenian Research AgencySloveniaJ1-8145
Slovenian Research AgencySloveniaP1-0010
Slovenian Research AgencySloveniaJ1-1705

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-12
    Type: Initial release
  • Version 1.1: 2021-05-19
    Changes: Database references
  • Version 1.2: 2021-06-30
    Changes: Database references
  • Version 1.3: 2024-07-03
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-11-13
    Changes: Structure summary