6YS8 | pdb_00006ys8

Structure of GldLM, the proton-powered motor that drives protein transport and gliding motility

PDB DOI: https://doi.org/10.2210/pdb6YS8/pdb
EM Map EMD-10893: EMDB EMDataResource

Classification: MOTOR PROTEIN
Organism(s): Flavobacterium johnsoniae
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD mpstruc

Deposited: 2020-04-21 Released: 2020-10-14
Deposition Author(s): Hennell James, R., Deme, J.C., Lea, S.M.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 6YS8

This is version 1.1 of the entry. See complete history.

Literature

Structure of a proton-powered molecular motor that drives protein transport and gliding motility

Hennell James, R., Deme, J.C., Kjaer, A., Alcock, F., Silale, A., Lauber, F., Bersk, B.C., Lea, S.M.

(2020) Nat Microbiol

Macromolecule Content

Total Structure Weight: 223.64 kDa
Atom Count: 5,624
Modeled Residue Count: 737
Deposited Residue Count: 2,101
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GldM	A, B	513	Flavobacterium johnsoniae	Mutation(s): 0 Gene Names: gldM Membrane Entity: Yes
UniProt
Find proteins for Q5EGM3 (Flavobacterium johnsoniae) Explore Q5EGM3 Go to UniProtKB: Q5EGM3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5EGM3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GldL	C [auth G], D [auth F], E, F [auth D], G [auth C]	215	Flavobacterium johnsoniae	Mutation(s): 0 Gene Names: gldL, SAMN05444388_10142 Membrane Entity: Yes
UniProt
Find proteins for Q5EGM4 (Flavobacterium johnsoniae) Explore Q5EGM4 Go to UniProtKB: Q5EGM4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5EGM4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.1

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-10-14

Deposition Author(s):

Hennell James, R.

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	107929/Z/15/Z
Wellcome Trust	United Kingdom	100298/Z/12/Z
Wellcome Trust	United Kingdom	201536/Z/16/Z

Revision History (Full details and data files)

Version 1.0: 2020-10-14
Type: Initial release
Version 1.1: 2024-05-22
Changes: Data collection, Database references