6XTJ | pdb_00006xtj

The high resolution structure of the FERM domain of human FERMT2

• PDB DOI: https://doi.org/10.2210/pdb6XTJ/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2020-01-16 Released: 2020-02-12 
• Deposition Author(s): Bradshaw, W.J., Katis, V.L., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.
• Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.204 (Depositor), 0.212 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.190 (DCC) 

Starting Model: experimental

Literature

The high resolution structure of the FERM domain of human FERMT2

Bradshaw, W.J., Katis, V.L., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 56.16 kDa 
• Atom Count: 4,344 
• Modeled Residue Count: 451 
• Deposited Residue Count: 478 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fermitin family homolog 2,Fermitin family homolog 2,Fermitin family homolog 2	A [auth AAA]	478	Homo sapiens	Mutation(s): 0  Gene Names: FERMT2, KIND2, MIG2, PLEKHC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q96AC1 (Homo sapiens) Explore Q96AC1  Go to UniProtKB:  Q96AC1
PHAROS:  Q96AC1 GTEx:  ENSG00000073712

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CIT	B [auth AAA], C [auth AAA], D [auth AAA]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.204 (Depositor), 0.212 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.190 (DCC) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 145.172	α = 90
b = 145.172	β = 90
c = 59.633	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2020-02-12 
Deposition Author(s): Bradshaw, W.J., Katis, V.L., Newman, J.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)	United States	1U54AG065187-01

Revision History  

• Version 1.0: 2020-02-12
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.2: 2024-11-20
  Changes: Structure summary