6XTB | pdb_00006xtb

Subunit BBS 5 of the human core BBSome complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6XTB

This is version 1.2 of the entry. See complete history

Literature

Structure of the human BBSome core complex.

Klink, B.U.Gatsogiannis, C.Hofnagel, O.Wittinghofer, A.Raunser, S.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.53910
  • Primary Citation Related Structures: 
    6XT9, 6XTB

  • PubMed Abstract: 

    The BBSome is a heterooctameric protein complex that plays a central role in primary cilia homeostasis. Its malfunction causes the severe ciliopathy Bardet-Biedl syndrome (BBS). The complex acts as a cargo adapter that recognizes signaling proteins such as GPCRs and links them to the intraflagellar transport machinery. The underlying mechanism is poorly understood. Here we present a high-resolution cryo-EM structure of a human heterohexameric core subcomplex of the BBSome. The structure reveals the architecture of the complex in atomic detail. It explains how the subunits interact with each other and how disease-causing mutations hamper this interaction. The complex adopts a conformation that is open for binding to membrane-associated GTPase Arl6 and a large positively charged patch likely strengthens the interaction with the membrane. A prominent negatively charged cleft at the center of the complex is likely involved in binding of positively charged signaling sequences of cargo proteins.


  • Organizational Affiliation
    • Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.

Macromolecule Content 

  • Total Structure Weight: 38.8 kDa 
  • Atom Count: 1,161 
  • Modeled Residue Count: 235 
  • Deposited Residue Count: 341 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Bardet-Biedl syndrome 5 proteinA [auth E]341Homo sapiensMutation(s): 0 
Gene Names: BBS5
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N3I7 (Homo sapiens)
Explore Q8N3I7 
Go to UniProtKB:  Q8N3I7
PHAROS:  Q8N3I7
GTEx:  ENSG00000163093 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N3I7
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONSPHIRE1.2-1.3

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-19
    Type: Initial release
  • Version 1.1: 2020-07-29
    Changes: Data collection
  • Version 1.2: 2024-05-22
    Changes: Data collection, Database references