6WPO

NMR Structure of HSP-4 antimicrobial peptide in presence of DPC-d38 micelles

  • Classification: ANTIMICROBIAL PROTEIN
  • Organism(s): Boana punctata
  • Mutation(s): Yes 
  • Membrane Protein: Yes  OPM

  • Deposited: 2020-04-27 Released: 2021-03-17 
  • Deposition Author(s): Verly, R.M., Nunes, L.O.
  • Funding Organization(s): Minas Gerais State Agency for Research and Development (FAPEMIG), Brazilian National Council for Scientific and Technological Development (CNPq)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

High-resolution structural profile of hylaseptin-4: Aggregation, membrane topology and pH dependence of overall membrane binding process.

Nunes, L.O.Munhoz, V.H.O.Sousa, A.A.de Souza, K.R.Santos, T.L.Bemquerer, M.P.Ferreira, D.E.C.de Magalhaes, M.T.Q.Resende, J.M.Alcantara, A.F.C.Aisenbrey, C.Veloso, D.P.Bechinger, B.Verly, R.M.

(2021) Biochim Biophys Acta Biomembr 1863: 183581-183581

  • DOI: https://doi.org/10.1016/j.bbamem.2021.183581
  • Primary Citation of Related Structures:  
    6WPO

  • PubMed Abstract: 

    Hylaseptin-4 (HSP-4, GIGDILKNLAKAAGKAALHAVGESL-NH 2 ) is an antimicrobial peptide originally isolated from Hypsiboas punctatus tree frog. The peptide has been chemically synthetized for structural investigations by CD and NMR spectroscopies. CD experiments reveal the high helical content of HSP-4 in biomimetic media. Interestingly, the aggregation process seems to occur at high peptide concentrations either in aqueous solution or in presence of biomimetic membranes, indicating an increase in the propensity of the peptide for adopting a helical conformation. High-resolution NMR structures determined in presence of DPC-d 38 micelles show a highly ordered α-helix from amino acid residues I2 to S24 and a smooth bend near G14. A large separation between hydrophobic and hydrophilic residues occurs up to the A16 residue, from which a shift in the amphipathicity is noticed. Oriented solid-state NMR spectroscopy show a roughly parallel orientation of the helical structure along the POPC lipid bilayer surface, with an insertion of the hydrophobic N-terminus into the bilayer core. Moreover, a noticeable pH dependence of the aggregation process in both aqueous and in biomimetic membrane environments is attributed to a single histidine residue (H19). The protonation degree of the imidazole side-chain might help in modulating the peptide-peptide or peptide-lipid interactions. Finally, molecular dynamics simulations confirm the orientation and preferential helical conformation and in addition, show that HSP-4 tends to self-aggregate in order to stabilize its active conformation in aqueous or phospholipid bilayer environments.


  • Organizational Affiliation

    Departamento de Química, Universidade Federal dos Vales do Jequitinhonha e Mucuri, 39100-000 Diamantina, MG, Brazil.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hylaseptin-426Boana punctataMutation(s): 1 
Membrane Entity: Yes 
UniProt
Find proteins for U5HKE6 (Boana punctata)
Explore U5HKE6 
Go to UniProtKB:  U5HKE6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupU5HKE6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Minas Gerais State Agency for Research and Development (FAPEMIG)Brazil--
Brazilian National Council for Scientific and Technological Development (CNPq)Brazil--

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-17
    Type: Initial release