6WDN | pdb_00006wdn

Cryo-EM structure of mitochondrial calcium uniporter holocomplex in low Ca2+


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Structure and mechanism of the mitochondrial Ca2+uniporter holocomplex.

Fan, M.Zhang, J.Tsai, C.W.Orlando, B.J.Rodriguez, M.Xu, Y.Liao, M.Tsai, M.F.Feng, L.

(2020) Nature 582: 129-133

  • DOI: https://doi.org/10.1038/s41586-020-2309-6
  • Primary Citation Related Structures: 
    6WDN, 6WDO

  • PubMed Abstract: 

    Mitochondria take up Ca 2+ through the mitochondrial calcium uniporter complex to regulate energy production, cytosolic Ca 2+ signalling and cell death 1,2 . In mammals, the uniporter complex (uniplex) contains four core components: the pore-forming MCU protein, the gatekeepers MICU1 and MICU2, and an auxiliary subunit, EMRE, essential for Ca 2+ transport 3-8 . To prevent detrimental Ca 2+ overload, the activity of MCU must be tightly regulated by MICUs, which sense changes in cytosolic Ca 2+ concentrations to switch MCU on and off 9,10 . Here we report cryo-electron microscopic structures of the human mitochondrial calcium uniporter holocomplex in inhibited and Ca 2+ -activated states. These structures define the architecture of this multicomponent Ca 2+ -uptake machinery and reveal the gating mechanism by which MICUs control uniporter activity. Our work provides a framework for understanding regulated Ca 2+ uptake in mitochondria, and could suggest ways of modulating uniporter activity to treat diseases related to mitochondrial Ca 2+ overload.


  • Organizational Affiliation
    • Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA.

Macromolecule Content 

  • Total Structure Weight: 189.35 kDa 
  • Atom Count: 12,612 
  • Modeled Residue Count: 1,540 
  • Deposited Residue Count: 1,614 
  • Unique protein chains: 4

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Calcium uptake protein 2, mitochondrial335Homo sapiensMutation(s): 0 
Gene Names: MICU2EFHA1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IYU8 (Homo sapiens)
Explore Q8IYU8 
Go to UniProtKB:  Q8IYU8
PHAROS:  Q8IYU8
GTEx:  ENSG00000165487 
Entity Groups
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UniProt GroupQ8IYU8
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Calcium uptake protein 1, mitochondrial363Homo sapiensMutation(s): 0 
Gene Names: MICU1CALCCBARA1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BPX6 (Homo sapiens)
Explore Q9BPX6 
Go to UniProtKB:  Q9BPX6
PHAROS:  Q9BPX6
GTEx:  ENSG00000107745 
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UniProt GroupQ9BPX6
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Essential MCU regulator, mitochondrialC [auth F],
E [auth D],
G [auth H],
I [auth J]
51Homo sapiensMutation(s): 0 
Gene Names: SMDT1C22orf32EMRE
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H4I9 (Homo sapiens)
Explore Q9H4I9 
Go to UniProtKB:  Q9H4I9
PHAROS:  Q9H4I9
GTEx:  ENSG00000183172 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Calcium uniporter protein, mitochondrialD [auth C],
F [auth G],
H [auth I],
J [auth E]
178Homo sapiensMutation(s): 0 
Gene Names: MCUC10orf42CCDC109A
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NE86 (Homo sapiens)
Explore Q8NE86 
Go to UniProtKB:  Q8NE86
PHAROS:  Q8NE86
GTEx:  ENSG00000156026 
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UniProt GroupQ8NE86
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-27
    Type: Initial release
  • Version 1.1: 2020-06-17
    Changes: Database references
  • Version 1.2: 2024-11-06
    Changes: Data collection, Database references, Structure summary