Download MendeleyCrystal structure of ADP RIBOSYLATION FACTOR-LIKE GTP BINDING PROTEIN /Small COPII coat GTPase SAR1 from Encephalitozoon cuniculi in complex with GDP
Abendroth, J., Fox III, D., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6VS4
Crystal structure of ADP RIBOSYLATION FACTOR-LIKE GTP BINDING PROTEIN /Small COPII coat GTPase SAR1 from Encephalitozoon cuniculi in complex with GDP
- PDB DOI: https://doi.org/10.2210/pdb6VS4/pdb
- Classification: HYDROLASE
- Organism(s): Encephalitozoon cuniculi GB-M1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-02-10 Released: 2020-03-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.235
- R-Value Work: 0.180
- R-Value Observed: 0.184
Starting Model: in silico
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small COPII coat GTPase SAR1 | 225 | Encephalitozoon cuniculi GB-M1 | Mutation(s): 0 Gene Names: SAR1, ECU05_0090 EC: 3.6.5 |  | |
UniProt | |||||
Find proteins for Q8SS09 (Encephalitozoon cuniculi (strain GB-M1)) Explore Q8SS09 Go to UniProtKB: Q8SS09 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8SS09 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP (Subject of Investigation/LOI) Query on GDP | D [auth A], H [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| PEG Query on PEG | C [auth A], F [auth B], G [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | E [auth A], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.235
- R-Value Work: 0.180
- R-Value Observed: 0.184
- Space Group: P 43 21 2
- Diffraction Data: https://doi.org/10.18430/m36vs4
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.19 | α = 90 |
| b = 65.19 | β = 90 |
| c = 307.71 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MR-Rosetta | phasing |
Entry History
Deposition Data
- Released Date: 2020-03-11 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2020-03-11
Type: Initial release - Version 1.1: 2024-03-06
Changes: Data collection, Database references, Derived calculations - Version 1.2: 2024-04-03
Changes: Refinement description
