6VPN

Solution structure of antifungal plant defensin PvD1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Synthesis, Structure, and Activity of the Antifungal Plant DefensinPvD1.

Skalska, J.Andrade, V.M.Cena, G.L.Harvey, P.J.Gaspar, D.Mello, E.O.Henriques, S.T.Valle, J.Gomes, V.M.Conceicao, K.Castanho, M.A.R.B.Andreu, D.

(2020) J Med Chem 63: 9391-9402

  • DOI: https://doi.org/10.1021/acs.jmedchem.0c00543
  • Primary Citation of Related Structures:  
    6VPN

  • PubMed Abstract: 

    Available treatments for invasive fungal infections have limitations, including toxicity and the emergence of resistant strains. Therefore, there is an urgent need for alternative solutions. Because of their unique mode of action and high selectivity, plant defensins (PDs) are worthy therapeutic candidates. Chemical synthesis remains a preferred method for the production of many peptide-based therapeutics. Given the relatively long sequence of PDs, as well as their complicated posttranslational modifications, the synthetic route can be considered challenging. Here, we describe a total synthesis of Pv D 1 , the defensin from the common bean Phaseolus vulgaris . Analytical, structural, and functional characterization revealed that both natural and synthetic peptides fold into a canonical CSαβ motif stabilized by conserved disulfide bonds. Moreover, synthetic Pv D 1 retained the biological activity against four different Candida species and showed no toxicity in vivo . Adding the high resistance of synthetic Pv D 1 to proteolytic degradation, we claim that conditions are now met to consider PDs druggable biologicals.


  • Organizational Affiliation

    Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisbon, Portugal.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Knot1 domain-containing protein47Phaseolus vulgarisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for V7BTW4 (Phaseolus vulgaris)
Explore V7BTW4 
Go to UniProtKB:  V7BTW4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupV7BTW4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2020-08-26 
  • Deposition Author(s): Harvey, P.J.

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-26
    Type: Initial release
  • Version 1.1: 2020-09-23
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Database references, Other
  • Version 1.3: 2024-10-23
    Changes: Data collection, Database references, Structure summary