6VM1

Chloroplast ATP synthase (C3, CF1FO)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of redox modulation on chloroplast ATP synthase.

Yang, J.H.Williams, D.Kandiah, E.Fromme, P.Chiu, P.L.

(2020) Commun Biol 3: 482-482

  • DOI: https://doi.org/10.1038/s42003-020-01221-8
  • Primary Citation of Related Structures:  
    6VM1, 6VM4, 6VMB, 6VMD, 6VMG, 6VOF, 6VOG, 6VOH, 6VOI, 6VOJ, 6VOK, 6VOL, 6VOM, 6VON, 6VOO

  • PubMed Abstract: 

    In higher plants, chloroplast ATP synthase has a unique redox switch on its γ subunit that modulates enzyme activity to limit ATP hydrolysis at night. To understand the molecular details of the redox modulation, we used single-particle cryo-EM to determine the structures of spinach chloroplast ATP synthase in both reduced and oxidized states. The disulfide linkage of the oxidized γ subunit introduces a torsional constraint to stabilize the two β hairpin structures. Once reduced, free cysteines alleviate this constraint, resulting in a concerted motion of the enzyme complex and a smooth transition between rotary states to facilitate the ATP synthesis. We added an uncompetitive inhibitor, tentoxin, in the reduced sample to limit the flexibility of the enzyme and obtained high-resolution details. Our cryo-EM structures provide mechanistic insight into the redox modulation of the energy regulation activity of chloroplast ATP synthase.


  • Organizational Affiliation

    Center for Applied Structural Discovery (CASD), Biodesign Institute, Arizona State University, Tempe, AZ, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit alpha, chloroplastic
A, B, C
507Spinacia oleraceaMutation(s): 0 
EC: 7.1.2.2
UniProt
Find proteins for P06450 (Spinacia oleracea)
Go to UniProtKB:  P06450
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit beta, chloroplastic
D, E, F
498Spinacia oleraceaMutation(s): 0 
EC: 7.1.2.2
UniProt
Find proteins for P00825 (Spinacia oleracea)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit b, chloroplasticG [auth I]184Spinacia oleraceaMutation(s): 0 
UniProt
Find proteins for P06453 (Spinacia oleracea)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit b', chloroplasticH [auth J]222Spinacia oleraceaMutation(s): 0 
UniProt
Find proteins for P31853 (Spinacia oleracea)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit a, chloroplasticI [auth a]247Spinacia oleraceaMutation(s): 0 
UniProt
Find proteins for P06451 (Spinacia oleracea)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase delta chain, chloroplasticJ [auth d]257Spinacia oleraceaMutation(s): 0 
UniProt
Find proteins for P11402 (Spinacia oleracea)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase epsilon chain, chloroplasticK [auth e]134Spinacia oleraceaMutation(s): 0 
UniProt
Find proteins for P00833 (Spinacia oleracea)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase gamma chain, chloroplasticL [auth g]364Spinacia oleraceaMutation(s): 0 
UniProt
Find proteins for P05435 (Spinacia oleracea)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit c, chloroplastic81Spinacia oleraceaMutation(s): 0 
UniProt
Find proteins for P69447 (Spinacia oleracea)
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.4
MODEL REFINEMENTPHENIX1.17_3644

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-09
    Type: Initial release
  • Version 1.1: 2020-09-16
    Changes: Database references
  • Version 1.2: 2024-03-06
    Changes: Data collection, Database references