Structural adaptation of oxygen tolerance in a key archaeal carbon fixation enzyme
Demirci, H., Wakatsuki, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Vinylacetyl-CoA Delta-isomerase | 502 | Nitrosopumilus maritimus SCM1 | Mutation(s): 0  Gene Names: Nmar_0207 EC: 5.3.3.3 | ||
UniProt | |||||
Find proteins for A9A1Y2 (Nitrosopumilus maritimus (strain SCM1)) Explore A9A1Y2  Go to UniProtKB:  A9A1Y2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A9A1Y2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FAD (Subject of Investigation/LOI) Query on FAD | F [auth A], M [auth B], Q [auth C], T [auth D] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N | |||
SF4 (Subject of Investigation/LOI) Query on SF4 | E [auth A], L [auth B], P [auth C], S [auth D] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
SO4 Query on SO4 | G [auth A], H [auth A], I [auth A], N [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
PO4 Query on PO4 | J [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
FE Query on FE | K [auth A], O [auth B], R [auth C], U [auth D] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 87.53 | α = 90 |
b = 72.954 | β = 98.38 |
c = 180.517 | γ = 90 |
Software Name | Purpose |
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DENZO | data reduction |
SCALEPACK | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
PHENIX | phasing |
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Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, United States) | United States | 1231306 |