6VFY | pdb_00006vfy

Crystal structure of mouse acyl-CoA thioesterase 7 with CoA

PDB DOI: https://doi.org/10.2210/pdb6VFY/pdb

Classification: HYDROLASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-01-06 Released: 2020-01-29
Deposition Author(s): Teakel, S.L., Forwood, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.268 (Depositor), 0.269 (DCC)
R-Value Work:
0.231 (Depositor), 0.232 (DCC)
R-Value Observed:
0.233 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of mouse acyl-CoA thioesterase 7 with CoA

Teakel, S.L., Forwood, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 115.44 kDa
Atom Count: 6,718
Modeled Residue Count: 910
Deposited Residue Count: 1,014
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytosolic acyl coenzyme A thioester hydrolase	A [auth D], B [auth E], C [auth F]	338	Mus musculus	Mutation(s): 0 Gene Names: Acot7, Bach EC: 3.1.2.2
UniProt
Find proteins for Q91V12 (Mus musculus) Explore Q91V12 Go to UniProtKB: Q91V12
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q91V12
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA (Subject of Investigation/LOI) Query on COA Download:Ideal Coordinates CCD File SDF format, chain F SDF format, chain E SDF format, chain D MOL2 format, chain F MOL2 format, chain E MOL2 format, chain D mmCIF format, chain F mmCIF format, chain E mmCIF format, chain D	D, E, F	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain D Focus chain E Focus chain F Interactions & Density Focus chain D Focus chain E Focus chain F
PO4 Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain G [auth F] MOL2 format, chain G [auth F] mmCIF format, chain G [auth F]	G [auth F]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain G [auth F] Interactions & Density Focus chain G [auth F]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.268 (Depositor), 0.269 (DCC)
R-Value Work: 0.231 (Depositor), 0.232 (DCC)
R-Value Observed: 0.233 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.156	α = 90
b = 135.331	β = 100.57
c = 70.126	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data reduction
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-01-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-01-29
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.