6VBY

Cinnamate 4-hydroxylase (C4H1) from Sorghum bicolor

  • Classification: OXIDOREDUCTASE
  • Organism(s): Sorghum bicolor
  • Expression System: Escherichia coli
  • Mutation(s): No 
  • Membrane Protein: Yes  OPM

  • Deposited: 2019-12-19 Released: 2020-05-06 
  • Deposition Author(s): Zhang, B., Kang, C., Lewis, K.M.
  • Funding Organization(s): National Science Foundation (NSF, United States), Department of Energy (DOE, United States), United States Department of Agriculture (USDA)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.199 

Starting Model: experimental
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This is version 1.2 of the entry. See complete history


Literature

Structure and Function of the Cytochrome P450 Monooxygenase Cinnamate 4-hydroxylase fromSorghum bicolor.

Zhang, B.Lewis, K.M.Abril, A.Davydov, D.R.Vermerris, W.Sattler, S.E.Kang, C.

(2020) Plant Physiol 183: 957-973

  • DOI: https://doi.org/10.1104/pp.20.00406
  • Primary Citation of Related Structures:  
    6VBY

  • PubMed Abstract: 

    Cinnamate 4-hydroxylase (C4H; CYP73A) is a cytochrome P450 monooxygenase associated externally with the endoplasmic reticulum of plant cells. The enzyme uses NADPH-cytochrome P450 reductase as a donor of electrons and hydroxylates cinnamic acid to form 4-coumaric acid in phenylpropanoid metabolism. In order to better understand the structure and function of this unique class of plant P450 enzymes, we have characterized the enzyme C4H1 from lignifying tissues of sorghum ( Sorghum bicolor ), encoded by Sobic.002G126600 Here we report the 1.7 Å resolution crystal structure of CYP73A33. The obtained structural information, along with the results of the steady-state kinetic analysis and the absorption spectroscopy titration, displays a high degree of similarity of the structural and functional features of C4H to those of other P450 proteins. Our data also suggest the presence of a putative allosteric substrate-binding site in a hydrophobic pocket on the enzyme surface. In addition, comparing the newly resolved structure with those of well-investigated cytochromes P450 from mammals and bacteria enabled us to identify those residues of critical functional importance and revealed a unique sequence signature that is potentially responsible for substrate specificity and catalytic selectivity of C4H.


  • Organizational Affiliation

    Department of Chemistry, Washington State University, Pullman, Washington 99164.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cinnamic acid 4-hydroxylase507Sorghum bicolorMutation(s): 0 
Gene Names: C4HSORBI_3002G126600
EC: 1.14.13.11 (PDB Primary Data), 1.14.14.91 (UniProt)
Membrane Entity: Yes 
UniProt
Find proteins for Q94IP1 (Sorghum bicolor)
Explore Q94IP1 
Go to UniProtKB:  Q94IP1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ94IP1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.199 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 132.278α = 90
b = 132.278β = 90
c = 79.431γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesCHE 1804699
Department of Energy (DOE, United States)United StatesDE-PI0000031
United States Department of Agriculture (USDA)United States2011-1006-30358

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-06
    Type: Initial release
  • Version 1.1: 2020-07-15
    Changes: Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description