6VAH

Crystal structure of human TEAD2 transcription factor in complex with Flufenamic acid derivative

• PDB DOI: https://doi.org/10.2210/pdb6VAH/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2019-12-17 Released: 2020-04-15 
• Deposition Author(s): Halabelian, L., Zeng, H., Dong, A., Li, Y., Melin, L., Gagnon, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Santhakumar, V., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free: 0.242 
• R-Value Work: 0.203 
• R-Value Observed: 0.205 

Starting Model: experimental

Literature

Crystal structure of human TEAD2 transcription factor in complex with Flufenamic acid derivative

Halabelian, L., Zeng, H., Dong, A., Li, Y., Melin, L., Gagnon, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Santhakumar, V., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 55.61 kDa 
• Atom Count: 3,238 
• Modelled Residue Count: 403 
• Deposited Residue Count: 480 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-4	A, B	240	Homo sapiens	Mutation(s): 0  Gene Names: TEAD2, TEF4
UniProt & NIH Common Fund Data Resources
Find proteins for Q15562 (Homo sapiens) Explore Q15562  Go to UniProtKB:  Q15562
PHAROS:  Q15562 GTEx:  ENSG00000074219

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
QZ1 (Subject of Investigation/LOI)	C [auth A], D [auth B]	2-fluoro-6-[(3-hexylphenyl)amino]benzoic acid C19 H22 F N O2 QLXYHXDPYBBBIM-UHFFFAOYSA-N
UNX	E [auth B]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.11 Å
• R-Value Free: 0.242 
• R-Value Work: 0.203 
• R-Value Observed: 0.205 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.792	α = 90
b = 61.307	β = 118.1
c = 79.862	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

Currently 6VAH does not have a validation slider image.

Entry History 

Deposition Data

• Released Date: 2020-04-15 
Deposition Author(s): Halabelian, L., Zeng, H., Dong, A., Li, Y., Melin, L., Gagnon, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Santhakumar, V., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2020-04-15
  Type: Initial release
  
• Version 1.1: 2023-10-11
  Changes: Data collection, Database references, Refinement description