Molecular characterization and three-dimensional structures of avian H8, H11, H14, H15 and swine H4 influenza virus hemagglutinins
Yang, H., Carney, P.J., Chang, J., Stevens, J.(2020) Heliyon 6: e04068
Experimental Data Snapshot
Starting Model: experimental
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(2020) Heliyon 6: e04068
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin HA1 chain | 332 | Influenza A virus (A/swine/Missouri/A01727926/2015(H4N6)) | Mutation(s): 0  Gene Names: HA | ||
UniProt | |||||
Find proteins for A0A140D8S6 (Influenza A virus) Explore A0A140D8S6  Go to UniProtKB:  A0A140D8S6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A140D8S6 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin HA2 chain | 186 | Influenza A virus (A/swine/Missouri/A01727926/2015(H4N6)) | Mutation(s): 0  Gene Names: HA | ||
UniProt | |||||
Find proteins for A0A140D8S6 (Influenza A virus) Explore A0A140D8S6  Go to UniProtKB:  A0A140D8S6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A140D8S6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | G, H, I | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G56014GC GlyCosmos:  G56014GC GlyGen:  G56014GC |
Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | J [auth A], K [auth C], L [auth E] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 68.973 | α = 90 |
b = 240.005 | β = 119.86 |
c = 68.953 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
PHASER | phasing |
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