6UVT | pdb_00006uvt

Human Connexin-26 (Low pH closed conformation)

PDB DOI: https://doi.org/10.2210/pdb6UVT/pdb
EM Map EMD-20916: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): Yes
Membrane Protein: Yes PDBTM

Deposited: 2019-11-04 Released: 2020-04-29
Deposition Author(s): Khan, A.K., Jagielnicki, M., Purdy, M.D., Yeager, M.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 7.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 6UVT

This is version 1.1 of the entry. See complete history.

Literature

A Steric 'Ball-and-Chain' Mechanism for pH-Mediated Regulation of Gap Junction Channels

Khan, A.K., Jagielnicki, M., McIntire, W.E., Purdy, M.D., Dharmarajan, V., Griffin, P.R., Yeager, M.

(2020) Cell Rep 31: 1-11

DOI: https://doi.org/10.1016/j.celrep.2020.03.046

Macromolecule Content

Total Structure Weight: 314.58 kDa
Atom Count: 8,448
Modeled Residue Count: 2,112
Deposited Residue Count: 2,712
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gap junction beta-2 protein	A B [auth K] C [auth L] D [auth B] E [auth H] A, B [auth K], C [auth L], D [auth B], E [auth H], F [auth C], G [auth I], H [auth D], I [auth J], J [auth E], K [auth F], L [auth G]	226	Homo sapiens	Mutation(s): 2 Gene Names: GJB2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P29033 (Homo sapiens) Explore P29033 Go to UniProtKB: P29033
PHAROS: P29033 GTEx: ENSG00000165474
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P29033
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 7.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX
MODEL REFINEMENT	Coot
RECONSTRUCTION	RELION

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-04-29

Deposition Author(s):

Jagielnicki, M.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R01 HL48908
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)	United States	F30 HL129702-01

Revision History (Full details and data files)

Version 1.0: 2020-04-29
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.