6TD4

IRF4 DNA-binding domain surface entropy mutant apo structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.218 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Cancer-associated mutations in the IRF4 DNA-binding domain confer no disadvantage in DNA-binding affinity and may increase transcriptional activity

Tatum, N.J.Scott, R.Doody, G.M.Hickson, I.Jennings, C.Martin, M.P.Tooze, R.M.Tucker, J.A.Wittner, A.Wang, L.Z.Wright, E.K.Wedge, S.R.Noble, M.E.M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Interferon regulatory factor 4121Homo sapiensMutation(s): 4 
Gene Names: IRF4MUM1
UniProt & NIH Common Fund Data Resources
Find proteins for Q15306 (Homo sapiens)
Explore Q15306 
Go to UniProtKB:  Q15306
PHAROS:  Q15306
GTEx:  ENSG00000137265 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15306
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download Ideal Coordinates CCD File 
B [auth A]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.218 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.874α = 90
b = 67.457β = 90
c = 69.884γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
REFMACrefinement
PHENIXrefinement
xia2data reduction
AutoSolphasing
Cootmodel building
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited KingdomC2115/A21421

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-18
    Type: Initial release
  • Version 1.1: 2021-02-17
    Changes: Database references, Source and taxonomy, Structure summary
  • Version 1.2: 2021-06-23
    Changes: Refinement description, Source and taxonomy
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references