6SYW | pdb_00006syw

human Aldose Reductase in complex with SAR25

• PDB DOI: https://doi.org/10.2210/pdb6SYW/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2019-10-01 Released: 2020-10-14 
• Deposition Author(s): Sandner, A., Heine, A., Klebe, G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 0.93 Å
• R-Value Free: 
  0.123 (Depositor), 0.124 (DCC) 
• R-Value Work: 
  0.109 (Depositor), 0.110 (DCC) 

Starting Model: experimental

Literature

human Aldose Reductase in complex with SAR25

Sandner, A., Heine, A., Klebe, G., Diederich, W., Scheer, F.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 37.1 kDa 
• Atom Count: 3,373 
• Modeled Residue Count: 316 
• Deposited Residue Count: 316 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
aldose reductase	A	316	Homo sapiens	Mutation(s): 0  EC: 1.1.1.21 (PDB Primary Data), 1.1.1.372 (UniProt), 1.1.1.300 (UniProt), 1.1.1.54 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P15121 (Homo sapiens) Explore P15121  Go to UniProtKB:  P15121
PHAROS:  P15121 GTEx:  ENSG00000085662

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP	B [auth A]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N
M0K (Subject of Investigation/LOI)	D [auth A]	2-[2-(cyclopropylmethylcarbamoyl)-5-fluoranyl-phenoxy]ethanoic acid C13 H14 F N O4 HTGQMFXFEJIGKP-UHFFFAOYSA-N
CIT	C [auth A]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 0.93 Å
• R-Value Free:  0.123 (Depositor), 0.124 (DCC) 
• R-Value Work:  0.109 (Depositor), 0.110 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.318	α = 90
b = 66.856	β = 91.99
c = 49.286	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-10-14 
Deposition Author(s): Sandner, A., Heine, A., Klebe, G.

Revision History  

• Version 1.0: 2020-10-14
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description