6STU | pdb_00006stu

Adenovirus 30 Fiber Knob protein

• PDB DOI: https://doi.org/10.2210/pdb6STU/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Human adenovirus 30
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-09-11 Released: 2020-09-16 
• Deposition Author(s): Baker, A.T., Mundy, R.M., Rizkallah, P.J., Parker, A.L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.39 Å
• R-Value Free: 
  0.268 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.217 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.219 (Depositor) 

Literature

Broad sialic acid usage amongst species D human adenovirus

Mundy, R.M., Baker, A.T., Bates, E.A., Cunliffe, T.G., Teijeira-Crespo, A., Moses, E., Rizkallah, P.J., Parker, A.L.

(2023) Npj Viruses 1: 1

• DOI: https://doi.org/10.1038/s44298-023-00001-5

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: homology

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 137.1 kDa 
• Atom Count: 9,637 
• Modeled Residue Count: 1,220 
• Deposited Residue Count: 1,248 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fiber	A, B, C, D, E, F	208	Human adenovirus 30	Mutation(s): 0  Gene Names: L5
UniProt
Find proteins for M0QTV3 (Human adenovirus 30) Explore M0QTV3  Go to UniProtKB:  M0QTV3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GLU	G [auth A]	GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-VKHMYHEASA-N
EDO	H [auth A], I [auth F]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.39 Å
• R-Value Free:  0.268 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.217 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.219 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.35	α = 90
b = 87.36	β = 90
c = 217.86	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-09-16 
Deposition Author(s): Baker, A.T., Mundy, R.M., Rizkallah, P.J., Parker, A.L.

Revision History  

• Version 1.0: 2020-09-16
  Type: Initial release
  
• Version 1.1: 2020-12-23
  Changes: Database references
• Version 1.2: 2021-02-10
  Changes: Database references
• Version 1.3: 2023-09-20
  Changes: Data collection, Database references
• Version 1.4: 2023-10-11
  Changes: Database references
• Version 1.5: 2024-11-13
  Changes: Database references, Structure summary