6SLD

Structure of the Phosphatidylcholine Binding Mutant of Yeast Sec14 Homolog Sfh1 (S175I,T177I) in Complex with Phosphatidylinositol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.143 
  • R-Value Observed: 0.144 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Structure of the Phosphatidylcholine Binding Mutant of Yeast Sec14 Homolog Sfh1 (S175I,T177I) in Complex with Phosphatidylinositol

Berger, J.Fitz, M.Johnen, P.Shanmugaratnam, S.Hocker, B.Stiel, A.C.Schaaf, G.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CRAL-TRIO domain-containing protein YKL091C307Saccharomyces cerevisiae S288CMutation(s): 2 
Gene Names: YKL091C
UniProt
Find proteins for P33324 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P33324 
Go to UniProtKB:  P33324
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP33324
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
B7N (Subject of Investigation/LOI)
Query on B7N

Download Ideal Coordinates CCD File 
B [auth A](1R)-2-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate
C45 H85 O13 P
YOBFISPJJWPPTK-BAAZTTAESA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.164 
  • R-Value Work: 0.143 
  • R-Value Observed: 0.144 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.22α = 90
b = 70.81β = 90
c = 90.19γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyEmmy Noether grant 1274/2-1
German Research FoundationGermanySCHA 1274/5-1
German Research FoundationGermanyGRK 2064
German Research FoundationGermanyGermany's Excellence Strategy, EXC-2070_390732324_PhenoRob

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-19
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Data collection, Database references