6RSF | pdb_00006rsf

NMR structure of pleurocidin KR in SDS micelles


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 50 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 6RSF

This is version 1.2 of the entry. See complete history

Literature

A pleurocidin analogue with greater conformational flexibility, enhanced antimicrobial potency and in vivo therapeutic efficacy.

Manzo, G.Hind, C.K.Ferguson, P.M.Amison, R.T.Hodgson-Casson, A.C.Ciazynska, K.A.Weller, B.J.Clarke, M.Lam, C.Man, R.C.H.Shaughnessy, B.G.O.Clifford, M.Bui, T.T.Drake, A.F.Atkinson, R.A.Lam, J.K.W.Pitchford, S.C.Page, C.P.Phoenix, D.A.Lorenz, C.D.Sutton, J.M.Mason, A.J.

(2020) Commun Biol 3: 697-697

  • DOI: https://doi.org/10.1038/s42003-020-01420-3
  • Primary Citation Related Structures: 
    6RSF, 6RSG

  • PubMed Abstract: 

    Antimicrobial peptides (AMPs) are a potential alternative to classical antibiotics that are yet to achieve a therapeutic breakthrough for treatment of systemic infections. The antibacterial potency of pleurocidin, an AMP from Winter Flounder, is linked to its ability to cross bacterial plasma membranes and seek intracellular targets while also causing membrane damage. Here we describe modification strategies that generate pleurocidin analogues with substantially improved, broad spectrum, antibacterial properties, which are effective in murine models of bacterial lung infection. Increasing peptide-lipid intermolecular hydrogen bonding capabilities enhances conformational flexibility, associated with membrane translocation, but also membrane damage and potency, most notably against Gram-positive bacteria. This negates their ability to metabolically adapt to the AMP threat. An analogue comprising D-amino acids was well tolerated at an intravenous dose of 15 mg/kg and similarly effective as vancomycin in reducing EMRSA-15 lung CFU. This highlights the therapeutic potential of systemically delivered, bactericidal AMPs.


  • Organizational Affiliation
    • Institute of Pharmaceutical Science, School of Cancer & Pharmaceutical Science, King's College London, Franklin-Wilkins Building, 150 Stamford Street, London, SE1 9NH, UK.

Macromolecule Content 

  • Total Structure Weight: 2.83 kDa 
  • Atom Count: 201 
  • Modeled Residue Count: 25 
  • Deposited Residue Count: 25 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Pleurocidin25Pseudopleuronectes americanusMutation(s): 4 
Membrane Entity: Yes 
UniProt
Find proteins for Q90ZY0 (Pseudopleuronectes americanus)
Explore Q90ZY0 
Go to UniProtKB:  Q90ZY0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ90ZY0
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 50 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-09
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references, Other
  • Version 1.2: 2024-06-19
    Changes: Data collection, Database references