6RPL | pdb_00006rpl

Expanded bat circovirus with DNA VLP

• PDB DOI: https://doi.org/10.2210/pdb6RPL/pdb
• EM Map EMD-4978: EMDB EMDataResource

• Classification: VIRUS LIKE PARTICLE
• Organism(s): Bat circovirus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-05-14 Released: 2020-11-25 
• Deposition Author(s): Forwood, J.K., Luque, D., Mata, C.P., Das, S., Raidal, S.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.85 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

expanded bat circovirus with DNA VLP

Forwood, J.K., Luque, D., Mata, C.P., Das, S., Raidal, S.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: microscopy

Macromolecule Content 

• Total Structure Weight: 27.75 kDa 
• Atom Count: 1,566 
• Modeled Residue Count: 189 
• Deposited Residue Count: 233 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A [auth u]	233	Bat circovirus	Mutation(s): 0
UniProt
Find proteins for R4L4W6 (Bat associated circovirus 2) Explore R4L4W6  Go to UniProtKB:  R4L4W6

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.85 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION
MODEL REFINEMENT	Coot
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-11-25 
Deposition Author(s): Forwood, J.K., Luque, D., Mata, C.P., Das, S., Raidal, S.

Revision History  

• Version 1.0: 2020-11-25
  Type: Initial release
  
• Version 1.1: 2024-05-22
  Changes: Data collection, Database references