6RO9 | pdb_00006ro9

Human spectrin SH3 domain D48G, E7V, K60V

PDB DOI: https://doi.org/10.2210/pdb6RO9/pdb

Classification: PROTEIN BINDING
Organism(s): Mola mola
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2019-05-10 Released: 2020-06-03
Deposition Author(s): Reverter, D., Navarro, S., Ventura, S.
Funding Organization(s): Spanish Ministry of Economy and Competitiveness

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.81 Å
R-Value Free:
0.256 (Depositor), 0.259 (DCC)
R-Value Work:
0.203 (Depositor), 0.210 (DCC)
R-Value Observed:
0.206 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Human spectrin SH3 domain D48G, E7V, K60V

Reverter, D., Navarro, S., Ventura, S.

To be published.

Macromolecule Content

Total Structure Weight: 7 kDa
Atom Count: 488
Modeled Residue Count: 56
Deposited Residue Count: 61
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spectrin alpha, non-erythrocytic 1	A	61	Mola mola	Mutation(s): 3
UniProt
Find proteins for A0A3Q3W9R3 (Mola mola) Explore A0A3Q3W9R3 Go to UniProtKB: A0A3Q3W9R3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A3Q3W9R3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.81 Å
R-Value Free: 0.256 (Depositor), 0.259 (DCC)
R-Value Work: 0.203 (Depositor), 0.210 (DCC)
R-Value Observed: 0.206 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.906	α = 90
b = 41.819	β = 90
c = 48.798	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-06-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Spanish Ministry of Economy and Competitiveness	Spain	--

Revision History (Full details and data files)

Version 1.0: 2020-06-03
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.