6QCM

Cryo em structure of the Listeria stressosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.21 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The cryo-electron microscopy supramolecular structure of the bacterial stressosome unveils its mechanism of activation.

Williams, A.H.Redzej, A.Rolhion, N.Costa, T.R.D.Rifflet, A.Waksman, G.Cossart, P.

(2019) Nat Commun 10: 3005-3005

  • DOI: https://doi.org/10.1038/s41467-019-10782-0
  • Primary Citation of Related Structures:  
    6QCM

  • PubMed Abstract: 

    How the stressosome, the epicenter of the stress response in bacteria, transmits stress signals from the environment has remained elusive. The stressosome consists of multiple copies of three proteins RsbR, RsbS and RsbT, a kinase that is important for its activation. Using cryo-electron microscopy, we determined the atomic organization of the Listeria monocytogenes stressosome at 3.38 Å resolution. RsbR and RsbS are organized in a 60-protomers truncated icosahedron. A key phosphorylation site on RsbR (T209) is partially hidden by an RsbR flexible loop, whose "open" or "closed" position could modulate stressosome activity. Interaction between three glutamic acids in the N-terminal domain of RsbR and the membrane-bound mini-protein Prli42 is essential for Listeria survival to stress. Together, our data provide the atomic model of the stressosome core and highlight a loop important for stressosome activation, paving the way towards elucidating the mechanism of signal transduction by the stressosome in bacteria.


  • Organizational Affiliation

    Unité Biologie et Génétique de la Paroi Bactérienne, Institut Pasteur, Groupe Avenir, INSERM, 75015, Paris, France. awilliam@pasteur.fr.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR protein128Listeria monocytogenes EGD-eMutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q8Y8K9 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
Explore Q8Y8K9 
Go to UniProtKB:  Q8Y8K9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8Y8K9
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR protein129Listeria monocytogenes EGD-eMutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q8Y8K9 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
Explore Q8Y8K9 
Go to UniProtKB:  Q8Y8K9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8Y8K9
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
RsbS protein118Listeria monocytogenes EGD-eMutation(s): 0 
Gene Names: rsbS
UniProt
Find proteins for Q92DC5 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
Explore Q92DC5 
Go to UniProtKB:  Q92DC5
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UniProt GroupQ92DC5
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR protein,RsbR proteinEB [auth AD]123Listeria monocytogenes EGD-eMutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q8Y8K9 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
Explore Q8Y8K9 
Go to UniProtKB:  Q8Y8K9
Entity Groups  
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UniProt GroupQ8Y8K9
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
RsbR proteinFB [auth CD],
GB [auth FD],
HB [auth HD]
136Listeria monocytogenes EGD-eMutation(s): 0 
Gene Names: RsbR
UniProt
Find proteins for Q8Y8K9 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
Explore Q8Y8K9 
Go to UniProtKB:  Q8Y8K9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8Y8K9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.21 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.12
RECONSTRUCTIONRELION2.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom098302
European Research CouncilFrance670823

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-21
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Data collection, Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Structure summary