6Q75 | pdb_00006q75

The structure of GH26A from Muricauda sp. MAR_2010_75

PDB DOI: https://doi.org/10.2210/pdb6Q75/pdb

Classification: HYDROLASE
Organism(s): Allomuricauda sp. MAR_2010_75
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-12-12 Released: 2020-01-15
Deposition Author(s): Robb, C.S., Hehemann, J.H.
Funding Organization(s): German Research Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free:
0.190 (Depositor), 0.190 (DCC)
R-Value Work:
0.152 (Depositor), 0.154 (DCC)
R-Value Observed:
0.154 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

The structure of GH26A from Muricauda sp. MAR_2010_75

Robb, C.S., Hehemann, J.H.

To be published.

Macromolecule Content

Total Structure Weight: 77.87 kDa
Atom Count: 5,418
Modeled Residue Count: 616
Deposited Residue Count: 666
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GH26A	A, B	333	Allomuricauda sp. MAR_2010_75	Mutation(s): 0
UniProt
Find proteins for A0ACD6BAW5 (Allomuricauda sp. MAR_2010_75) Explore A0ACD6BAW5 Go to UniProtKB: A0ACD6BAW5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BAW5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth B] mmCIF format, chain D [auth A] mmCIF format, chain E [auth B]	D [auth A], E [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.190 (Depositor), 0.190 (DCC)
R-Value Work: 0.152 (Depositor), 0.154 (DCC)
R-Value Observed: 0.154 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.524	α = 78
b = 49.342	β = 89.83
c = 71.711	γ = 69.64

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-01-15

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation	Germany	HE 7217/1-1

Revision History (Full details and data files)

Version 1.0: 2020-01-15
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.