6Q62 | pdb_00006q62

Xanthomonas albilineans Dihydropteroate synthase in complex with (indole-2-carboxylic acid) and (6-chloroguanine)

PDB DOI: https://doi.org/10.2210/pdb6Q62/pdb

Classification: TRANSFERASE
Organism(s): Xanthomonas albilineans
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2018-12-10 Released: 2020-01-15
Deposition Author(s): Oliveira, A.A., Hyvonen, M., Guido, R.V.C.
Funding Organization(s): Sao Paulo Research Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.239 (Depositor), 0.243 (DCC)
R-Value Work:
0.211 (Depositor), 0.215 (DCC)
R-Value Observed:
0.213 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Xanthomonas albilineans Dihydropteroate synthase in complex with (indole-2-carboxylic acid) and (6-chloroguanine)

Oliveira, A.A., Hyvonen, M., Guido, R.V.C.

To be published.

Macromolecule Content

Total Structure Weight: 129.92 kDa
Atom Count: 8,745
Modeled Residue Count: 1,064
Deposited Residue Count: 1,200
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dihydropteroate synthase	A, B [auth C], C [auth B], D	300	Xanthomonas albilineans	Mutation(s): 0 Gene Names: folP, XALc_1165 EC: 2.5.1.15
UniProt
Find proteins for D2UDM3 (Xanthomonas albilineans (strain GPE PC73 / CFBP 7063)) Explore D2UDM3 Go to UniProtKB: D2UDM3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D2UDM3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
6GU Query on 6GU Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain J [auth C] SDF format, chain O [auth B] SDF format, chain T [auth D] MOL2 format, chain E [auth A] MOL2 format, chain J [auth C] MOL2 format, chain O [auth B] MOL2 format, chain T [auth D] mmCIF format, chain E [auth A] mmCIF format, chain J [auth C] mmCIF format, chain O [auth B] mmCIF format, chain T [auth D]	E [auth A], J [auth C], O [auth B], T [auth D]	6-chloroguanine C₅ H₄ Cl N₅ RYYIULNRIVUMTQ-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain J [auth C] Focus chain O [auth B] Focus chain T [auth D] Interactions & Density Focus chain E [auth A] Focus chain J [auth C] Focus chain O [auth B] Focus chain T [auth D]
ICB Query on ICB Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain L [auth C] MOL2 format, chain G [auth A] MOL2 format, chain L [auth C] mmCIF format, chain G [auth A] mmCIF format, chain L [auth C]	G [auth A], L [auth C]	1H-indole-2-carboxylic acid C₉ H₇ N O₂ HCUARRIEZVDMPT-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain L [auth C] Interactions & Density Focus chain G [auth A] Focus chain L [auth C]
PEG Query on PEG Download:Ideal Coordinates CCD File SDF format, chain U [auth D] SDF format, chain V [auth D] MOL2 format, chain U [auth D] MOL2 format, chain V [auth D] mmCIF format, chain U [auth D] mmCIF format, chain V [auth D]	U [auth D], V [auth D]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain U [auth D] Focus chain V [auth D] Interactions & Density Focus chain U [auth D] Focus chain V [auth D]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain M [auth C] SDF format, chain N [auth C] SDF format, chain Q [auth B] SDF format, chain R [auth B] SDF format, chain S [auth B] SDF format, chain Y [auth D] SDF format, chain Z [auth D] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain M [auth C] MOL2 format, chain N [auth C] MOL2 format, chain Q [auth B] MOL2 format, chain R [auth B] MOL2 format, chain S [auth B] MOL2 format, chain Y [auth D] MOL2 format, chain Z [auth D] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain M [auth C] mmCIF format, chain N [auth C] mmCIF format, chain Q [auth B] mmCIF format, chain R [auth B] mmCIF format, chain S [auth B] mmCIF format, chain Y [auth D] mmCIF format, chain Z [auth D]	H [auth A] I [auth A] M [auth C] N [auth C] Q [auth B] H [auth A], I [auth A], M [auth C], N [auth C], Q [auth B], R [auth B], S [auth B], Y [auth D], Z [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain M [auth C] Focus chain N [auth C] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain Y [auth D] Focus chain Z [auth D] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain M [auth C] Focus chain N [auth C] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain Y [auth D] Focus chain Z [auth D]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain K [auth C] SDF format, chain P [auth B] SDF format, chain W [auth D] SDF format, chain X [auth D] MOL2 format, chain F [auth A] MOL2 format, chain K [auth C] MOL2 format, chain P [auth B] MOL2 format, chain W [auth D] MOL2 format, chain X [auth D] mmCIF format, chain F [auth A] mmCIF format, chain K [auth C] mmCIF format, chain P [auth B] mmCIF format, chain W [auth D] mmCIF format, chain X [auth D]	F [auth A], K [auth C], P [auth B], W [auth D], X [auth D]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain K [auth C] Focus chain P [auth B] Focus chain W [auth D] Focus chain X [auth D] Interactions & Density Focus chain F [auth A] Focus chain K [auth C] Focus chain P [auth B] Focus chain W [auth D] Focus chain X [auth D]