6Q3V

Crystal structure of Human N4BP1 KH domains

• PDB DOI: https://doi.org/10.2210/pdb6Q3V/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-12-04 Released: 2019-12-25 
• Deposition Author(s): Garg, A., Heinemann, U.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 0.231 
• R-Value Work: 0.181 
• R-Value Observed: 0.183 

Literature

Crystal structure of Human N4BP1 KH domains

Garg, A., Heinemann, U.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 20.85 kDa 
• Atom Count: 1,568 
• Modelled Residue Count: 188 
• Deposited Residue Count: 188 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NEDD4-binding protein 1	A	188	Homo sapiens	Mutation(s): 0  Gene Names: N4BP1, KIAA0615 EC: 3.1
UniProt & NIH Common Fund Data Resources
Find proteins for O75113 (Homo sapiens) Explore O75113  Go to UniProtKB:  O75113
PHAROS:  O75113 GTEx:  ENSG00000102921

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 0.231 
• R-Value Work: 0.181 
• R-Value Observed: 0.183 
• Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.69	α = 90
b = 108.69	β = 90
c = 27.727	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
Coot	model building
XSCALE	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-12-25 
Deposition Author(s): Garg, A., Heinemann, U.

Revision History  

• Version 1.0: 2019-12-25
  Type: Initial release
  
• Version 1.1: 2024-05-15
  Changes: Data collection, Database references