6PXM | pdb_00006pxm

Horse spleen apoferritin light chain

PDB DOI: https://doi.org/10.2210/pdb6PXM/pdb
EM Map EMD-20521: EMDB EMDataResource

Classification: METAL BINDING PROTEIN
Organism(s): Equus caballus
Mutation(s): No

Deposited: 2019-07-26 Released: 2019-08-07
Deposition Author(s): Kopylov, M., Kelley, K., Yen, L.Y., Rice, W.J., Eng, E.T., Carragher, B., Potter, C.S.
Funding Organization(s): National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 6PXM

This is version 1.3 of the entry. See complete history.

Literature

Horse spleen apoferritin light chain structure at 2.1 Angstrom resolution

Kopylov, M., Kelley, K., Yen, L.Y., Rice, W.J., Eng, E.T., Carragher, B., Potter, C.S.

To be published.

Macromolecule Content

Total Structure Weight: 480.09 kDa
Atom Count: 32,736
Modeled Residue Count: 4,080
Deposited Residue Count: 4,200
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin light chain	A [auth B] B [auth A] C D E A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y]	175	Equus caballus	Mutation(s): 0
UniProt
Find proteins for P02791 (Equus caballus) Explore P02791 Go to UniProtKB: P02791
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02791
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	0.6.5
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2019-08-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)	United States	GM103310

Revision History (Full details and data files)

Version 1.0: 2019-08-07
Type: Initial release
Version 1.1: 2019-12-18
Changes: Author supporting evidence
Version 1.2: 2024-03-20
Changes: Data collection, Database references
Version 1.3: 2025-08-20
Changes: Data collection, Experimental preparation, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.