6OWF

Structure of a synthetic beta-carboxysome shell, T=3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of a Syntheticbeta-Carboxysome Shell.

Sutter, M.Laughlin, T.G.Sloan, N.B.Serwas, D.Davies, K.M.Kerfeld, C.A.

(2019) Plant Physiol 181: 1050-1058

  • DOI: https://doi.org/10.1104/pp.19.00885
  • Primary Citation of Related Structures:  
    6OWF, 6OWG

  • PubMed Abstract: 

    Carboxysomes are capsid-like, CO 2 -fixing organelles that are present in all cyanobacteria and some chemoautotrophs and that substantially contribute to global primary production. They are composed of a selectively permeable protein shell that encapsulates Rubisco, the principal CO 2 -fixing enzyme, and carbonic anhydrase. As the centerpiece of the carbon-concentrating mechanism, by packaging enzymes that collectively enhance catalysis, the carboxysome shell enables the generation of a locally elevated concentration of substrate CO 2 and the prevention of CO 2 escape. A functional carboxysome consisting of an intact shell and cargo is essential for cyanobacterial growth under ambient CO 2 concentrations. Using cryo-electron microscopy, we have determined the structure of a recombinantly produced simplified β-carboxysome shell. The structure reveals the sidedness and the specific interactions between the carboxysome shell proteins. The model provides insight into the structural basis of selective permeability of the carboxysome shell and can be used to design modifications to investigate the mechanisms of cargo encapsulation and other physiochemical properties such as permeability. Notably, the permeability properties are of great interest for modeling and evaluating this carbon-concentrating mechanism in metabolic engineering. Moreover, we find striking similarity between the carboxysome shell and the structurally characterized, evolutionarily distant metabolosome shell, implying universal architectural principles for bacterial microcompartment shells.


  • Organizational Affiliation

    Environmental Genomics and Systems Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Microcompartments protein113Halothece sp. PCC 7418Mutation(s): 0 
Gene Names: PCC7418_3532
UniProt
Find proteins for K9YHS7 (Halothece sp. (strain PCC 7418))
Explore K9YHS7 
Go to UniProtKB:  K9YHS7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK9YHS7
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml105Halothece sp. PCC 7418Mutation(s): 0 
Gene Names: PCC7418_3533
UniProt
Find proteins for K9YFK1 (Halothece sp. (strain PCC 7418))
Explore K9YFK1 
Go to UniProtKB:  K9YFK1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK9YFK1
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0b2

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-25
    Type: Initial release
  • Version 1.1: 2019-11-20
    Changes: Database references
  • Version 1.2: 2019-12-18
    Changes: Other
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references