6OF6

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history. 


Literature

Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.

Nguyen, H.A., Sunita, S., Dunham, C.M.

(2020) Proc Natl Acad Sci U S A 117: 16333-16338

  • DOI: https://doi.org/10.1073/pnas.2004170117
  • Primary Citation of Related Structures:  
    6OF6, 6OJ2, 6OPE, 6ORD

  • PubMed Abstract: 

    Bacterial transfer RNAs (tRNAs) contain evolutionarily conserved sequences and modifications that ensure uniform binding to the ribosome and optimal translational accuracy despite differences in their aminoacyl attachments and anticodon nucleotide sequences. In the tRNA anticodon stem-loop, the anticodon sequence is correlated with a base pair in the anticodon loop (nucleotides 32 and 38) to tune the binding of each tRNA to the decoding center in the ribosome. Disruption of this correlation renders the ribosome unable to distinguish correct from incorrect tRNAs. The molecular basis for how these two tRNA features combine to ensure accurate decoding is unclear. Here, we solved structures of the bacterial ribosome containing either wild-type [Formula: see text] or [Formula: see text] containing a reversed 32-38 pair on cognate and near-cognate codons. Structures of wild-type [Formula: see text] bound to the ribosome reveal 23S ribosomal RNA (rRNA) nucleotide A1913 positional changes that are dependent on whether the codon-anticodon interaction is cognate or near cognate. Further, the 32-38 pair is destabilized in the context of a near-cognate codon-anticodon pair. Reversal of the pairing in [Formula: see text] ablates A1913 movement regardless of whether the interaction is cognate or near cognate. These results demonstrate that disrupting 32-38 and anticodon sequences alters interactions with the ribosome that directly contribute to misreading.

    • Organizational Affiliation: 

    Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.


Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2B [auth QB],
FB [auth XB]		256Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3C [auth QC],
GB [auth XC]		239Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4D [auth QD],
HB [auth XD]		209Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5E [auth QE],
IB [auth XE]		162Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6F [auth QF],
JB [auth XF]		101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7G [auth QG],
KB [auth XG]		156Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8H [auth QH],
LB [auth XH]		138Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9I [auth QI],
MB [auth XI]		128Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10J [auth QJ],
NB [auth XJ]		105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11K [auth QK],
OB [auth XK]		129Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12L [auth QL],
PB [auth XL]		131Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13M [auth QM],
QB [auth XM]		126Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZN [auth QN],
RB [auth XN]		61Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15O [auth QO],
SB [auth XO]		89Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16P [auth QP],
TB [auth XP]		88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17Q [auth QQ],
UB [auth XQ]		105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18R [auth QR],
VB [auth XR]		88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19S [auth QS],
WB [auth XS]		93Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20T [auth QT],
XB [auth XT]		106Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein ThxU [auth QU],
YB [auth XU]		27Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27DC [auth Y0],
Z [auth R0]		85Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28AA [auth R1],
EC [auth Y1]		98Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29BA [auth R2],
FC [auth Y2]		72Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30CA [auth R3],
GC [auth Y3]		60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31DA [auth R4],
HC [auth Y4]		71Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32EA [auth R5],
IC [auth Y5]		60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33FA [auth R6],
JC [auth Y6]		54Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34GA [auth R7],
KC [auth Y7]		49Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35HA [auth R8],
LC [auth Y8]		65Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36IA [auth R9],
MC [auth Y9]		37Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2LA [auth RD],
PC [auth YD]		276Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3MA [auth RE],
QC [auth YE]		206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4NA [auth RF],
RC [auth YF]		210Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5OA [auth RG],
SC [auth YG]		182Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6PA [auth RH],
TC [auth YH]		180Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9QA [auth RI],
UC [auth YI]		148Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13RA [auth RN],
VC [auth YN]		140Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14SA [auth RO],
WC [auth YO]		122Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15TA [auth RP],
XC [auth YP]		150Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16UA [auth RQ],
YC [auth YQ]		141Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17VA [auth RR],
ZC [auth YR]		118Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q9Z9H5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18AD [auth YS],
WA [auth RS]		112Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHQ4 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19BD [auth YT],
XA [auth RT]		146Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20CD [auth YU],
YA [auth RU]		118Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21DD [auth YV],
ZA [auth RV]		101Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22AB [auth RW],
ED [auth YW]		113Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23BB [auth RX],
FD [auth YX]		96Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24CB [auth RY],
GD [auth YY]		110Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25DB [auth RZ],
HD [auth YZ]		206Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHZ1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 1
MoleculeChains LengthOrganismImage
16S rRNAA [auth QA],
EB [auth XA]		1,522Thermus thermophilus HB8
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Entity ID: 22
MoleculeChains LengthOrganismImage
P-site tRNAfMetV [auth QV],
ZB [auth XV]		77Escherichia coli
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Entity ID: 23
MoleculeChains LengthOrganismImage
E-site tRNAAla(GGC)AC [auth XW],
W [auth QW]		76Escherichia coli
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Entity ID: 24
MoleculeChains LengthOrganismImage
mRNABC [auth XX],
X [auth QX]		19Escherichia coli
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Entity ID: 25
MoleculeChains LengthOrganismImage
A-site tRNAAla(GGC)CC [auth XY],
Y [auth QY]		76Escherichia coli #1/H766
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Entity ID: 36
MoleculeChains LengthOrganismImage
23S rRNAJA [auth RA],
NC [auth YA]		2,915Thermus thermophilus HB8
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Entity ID: 37
MoleculeChains LengthOrganismImage
5S rRNAKA [auth RB],
OC [auth YB]		122Thermus thermophilus HB8
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Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PAR
Query on PAR
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OH [auth QA],
YCA [auth XA]		PAROMOMYCIN
C23 H45 N5 O14
UOZODPSAJZTQNH-LSWIJEOBSA-N
SF4
Query on SF4
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DI [auth QD],
IDA [auth XD]		IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
AMP
Query on AMP
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TI [auth QY]ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
ZN
Query on ZN
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LI [auth QN],
QDA [auth XN]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
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AAA [auth XA]
ABA [auth XA]
ACA [auth XA]
ADA [auth XA]
AE [auth QA]
AAA [auth XA],
ABA [auth XA],
ACA [auth XA],
ADA [auth XA],
AE [auth QA],
AEA [auth Y0],
AF [auth QA],
AFA [auth YA],
AG [auth QA],
AGA [auth YA],
AH [auth QA],
AHA [auth YA],
AI [auth QA],
AIA [auth YA],
AJ [auth RA],
AJA [auth YA],
AK [auth RA],
AKA [auth YA],
AL [auth RA],
ALA [auth YA],
AM [auth RA],
AMA [auth YA],
AN [auth RA],
ANA [auth YA],
AO [auth RA],
AOA [auth YA],
AP [auth RA],
APA [auth YA],
AQ [auth RA],
AQA [auth YA],
AR [auth RA],
ARA [auth YA],
AS [auth RA],
ASA [auth YA],
AT [auth RA],
ATA [auth YA],
AU [auth RA],
AUA [auth YA],
AV [auth RA],
AVA [auth YA],
AW [auth RA],
AWA [auth YA],
AX [auth RA],
AXA [auth YG],
AY [auth RE],
AYA [auth YW],
AZ [auth XA],
BAA [auth XA],
BBA [auth XA],
BCA [auth XA],
BDA [auth XA],
BE [auth QA],
BEA [auth Y0],
BF [auth QA],
BFA [auth YA],
BG [auth QA],
BGA [auth YA],
BH [auth QA],
BHA [auth YA],
BI [auth QA],
BIA [auth YA],
BJ [auth RA],
BJA [auth YA],
BK [auth RA],
BKA [auth YA],
BL [auth RA],
BLA [auth YA],
BM [auth RA],
BMA [auth YA],
BN [auth RA],
BNA [auth YA],
BO [auth RA],
BOA [auth YA],
BP [auth RA],
BPA [auth YA],
BQ [auth RA],
BQA [auth YA],
BR [auth RA],
BRA [auth YA],
BS [auth RA],
BSA [auth YA],
BT [auth RA],
BTA [auth YA],
BU [auth RA],
BUA [auth YA],
BV [auth RA],
BVA [auth YA],
BW [auth RA],
BWA [auth YA],
BX [auth RA],
BXA [auth YH],
BY [auth RF],
BYA [auth YX],
BZ [auth XA],
CAA [auth XA],
CBA [auth XA],
CCA [auth XA],
CDA [auth XA],
CE [auth QA],
CEA [auth Y2],
CF [auth QA],
CFA [auth YA],
CG [auth QA],
CGA [auth YA],
CH [auth QA],
CHA [auth YA],
CI [auth QA],
CIA [auth YA],
CJ [auth RA],
CJA [auth YA],
CK [auth RA],
CKA [auth YA],
CL [auth RA],
CLA [auth YA],
CM [auth RA],
CMA [auth YA],
CN [auth RA],
CNA [auth YA],
CO [auth RA],
COA [auth YA],
CP [auth RA],
CPA [auth YA],
CQ [auth RA],
CQA [auth YA],
CR [auth RA],
CRA [auth YA],
CS [auth RA],
CSA [auth YA],
CT [auth RA],
CTA [auth YA],
CU [auth RA],
CUA [auth YA],
CV [auth RA],
CVA [auth YA],
CW [auth RA],
CWA [auth YB],
CX [auth RA],
CXA [auth YH],
CY [auth RF],
CYA [auth YX],
CZ [auth XA],
DAA [auth XA],
DBA [auth XA],
DCA [auth XA],
DDA [auth XA],
DE [auth QA],
DEA [auth Y2],
DF [auth QA],
DFA [auth YA],
DG [auth QA],
DGA [auth YA],
DH [auth QA],
DHA [auth YA],
DIA [auth YA],
DJ [auth RA],
DJA [auth YA],
DK [auth RA],
DKA [auth YA],
DL [auth RA],
DLA [auth YA],
DM [auth RA],
DMA [auth YA],
DN [auth RA],
DNA [auth YA],
DO [auth RA],
DOA [auth YA],
DP [auth RA],
DPA [auth YA],
DQ [auth RA],
DQA [auth YA],
DR [auth RA],
DRA [auth YA],
DS [auth RA],
DSA [auth YA],
DT [auth RA],
DTA [auth YA],
DU [auth RA],
DUA [auth YA],
DV [auth RA],
DVA [auth YA],
DW [auth RA],
DWA [auth YB],
DX [auth RA],
DXA [auth YH],
DY [auth RG],
DYA [auth YY],
DZ [auth XA],
EAA [auth XA],
EBA [auth XA],
ECA [auth XA],
EDA [auth XA],
EE [auth QA],
EEA [auth Y2],
EF [auth QA],
EFA [auth YA],
EG [auth QA],
EGA [auth YA],
EH [auth QA],
EHA [auth YA],
EI [auth QD],
EIA [auth YA],
EJ [auth RA],
EJA [auth YA],
EK [auth RA],
EKA [auth YA],
EL [auth RA],
ELA [auth YA],
EM [auth RA],
EMA [auth YA],
EN [auth RA],
ENA [auth YA],
EO [auth RA],
EOA [auth YA],
EP [auth RA],
EPA [auth YA],
EQ [auth RA],
EQA [auth YA],
ER [auth RA],
ERA [auth YA],
ES [auth RA],
ESA [auth YA],
ET [auth RA],
ETA [auth YA],
EU [auth RA],
EUA [auth YA],
EV [auth RA],
EVA [auth YA],
EW [auth RA],
EWA [auth YB],
EX [auth RA],
EXA [auth YH],
EY [auth RI],
EYA [auth YY],
EZ [auth XA],
FAA [auth XA],
FBA [auth XA],
FCA [auth XA],
FDA [auth XA],
FE [auth QA],
FEA [auth Y3],
FF [auth QA],
FFA [auth YA],
FG [auth QA],
FGA [auth YA],
FH [auth QA],
FHA [auth YA],
FI [auth QF],
FIA [auth YA],
FJ [auth RA],
FJA [auth YA],
FK [auth RA],
FKA [auth YA],
FL [auth RA],
FLA [auth YA],
FM [auth RA],
FMA [auth YA],
FN [auth RA],
FNA [auth YA],
FO [auth RA],
FOA [auth YA],
FP [auth RA],
FPA [auth YA],
FQ [auth RA],
FQA [auth YA],
FR [auth RA],
FRA [auth YA],
FS [auth RA],
FSA [auth YA],
FT [auth RA],
FTA [auth YA],
FU [auth RA],
FUA [auth YA],
FV [auth RA],
FVA [auth YA],
FW [auth RA],
FWA [auth YB],
FX [auth RA],
FXA [auth YH],
FY [auth RP],
FYA [auth YY],
FZ [auth XA],
GAA [auth XA],
GBA [auth XA],
GCA [auth XA],
GDA [auth XB],
GE [auth QA],
GEA [auth Y4],
GF [auth QA],
GFA [auth YA],
GG [auth QA],
GGA [auth YA],
GH [auth QA],
GHA [auth YA],
GI [auth QH],
GIA [auth YA],
GJ [auth RA],
GJA [auth YA],
GK [auth RA],
GKA [auth YA],
GL [auth RA],
GLA [auth YA],
GM [auth RA],
GMA [auth YA],
GN [auth RA],
GNA [auth YA],
GO [auth RA],
GOA [auth YA],
GP [auth RA],
GPA [auth YA],
GQ [auth RA],
GQA [auth YA],
GR [auth RA],
GRA [auth YA],
GS [auth RA],
GSA [auth YA],
GT [auth RA],
GTA [auth YA],
GU [auth RA],
GUA [auth YA],
GV [auth RA],
GVA [auth YA],
GW [auth RA],
GWA [auth YB],
GX [auth RA],
GXA [auth YI],
GY [auth RP],
GYA [auth YY],
GZ [auth XA],
HAA [auth XA],
HBA [auth XA],
HCA [auth XA],
HDA [auth XB],
HE [auth QA],
HEA [auth Y4],
HF [auth QA],
HFA [auth YA],
HG [auth QA],
HGA [auth YA],
HH [auth QA],
HHA [auth YA],
HI [auth QK],
HIA [auth YA],
HJ [auth RA],
HJA [auth YA],
HK [auth RA],
HKA [auth YA],
HL [auth RA],
HLA [auth YA],
HM [auth RA],
HMA [auth YA],
HN [auth RA],
HNA [auth YA],
HO [auth RA],
HOA [auth YA],
HP [auth RA],
HPA [auth YA],
HQ [auth RA],
HQA [auth YA],
HR [auth RA],
HRA [auth YA],
HS [auth RA],
HSA [auth YA],
HT [auth RA],
HTA [auth YA],
HU [auth RA],
HUA [auth YA],
HV [auth RA],
HVA [auth YA],
HW [auth RA],
HWA [auth YB],
HX [auth RA],
HXA [auth YN],
HY [auth RP],
HYA [auth YY],
HZ [auth XA],
IAA [auth XA],
IBA [auth XA],
ICA [auth XA],
ID [auth QA],
IE [auth QA],
IEA [auth Y5],
IF [auth QA],
IFA [auth YA],
IG [auth QA],
IGA [auth YA],
IH [auth QA],
IHA [auth YA],
II [auth QK],
IIA [auth YA],
IJ [auth RA],
IJA [auth YA],
IK [auth RA],
IKA [auth YA],
IL [auth RA],
ILA [auth YA],
IM [auth RA],
IMA [auth YA],
IN [auth RA],
INA [auth YA],
IO [auth RA],
IOA [auth YA],
IP [auth RA],
IPA [auth YA],
IQ [auth RA],
IQA [auth YA],
IR [auth RA],
IRA [auth YA],
IS [auth RA],
ISA [auth YA],
IT [auth RA],
ITA [auth YA],
IU [auth RA],
IUA [auth YA],
IV [auth RA],
IVA [auth YA],
IW [auth RA],
IWA [auth YB],
IX [auth RA],
IXA [auth YO],
IY [auth RR],
IZ [auth XA],
JAA [auth XA],
JBA [auth XA],
JCA [auth XA],
JD [auth QA],
JDA [auth XD],
JE [auth QA],
JEA [auth Y7],
JF [auth QA],
JFA [auth YA],
JG [auth QA],
JGA [auth YA],
JH [auth QA],
JHA [auth YA],
JI [auth QL],
JIA [auth YA],
JJ [auth RA],
JJA [auth YA],
JK [auth RA],
JKA [auth YA],
JL [auth RA],
JLA [auth YA],
JM [auth RA],
JMA [auth YA],
JN [auth RA],
JNA [auth YA],
JO [auth RA],
JOA [auth YA],
JP [auth RA],
JPA [auth YA],
JQ [auth RA],
JQA [auth YA],
JR [auth RA],
JRA [auth YA],
JS [auth RA],
JSA [auth YA],
JT [auth RA],
JTA [auth YA],
JU [auth RA],
JUA [auth YA],
JV [auth RA],
JVA [auth YA],
JW [auth RA],
JWA [auth YB],
JX [auth RA],
JXA [auth YP],
JY [auth RR],
JZ [auth XA],
KAA [auth XA],
KBA [auth XA],
KCA [auth XA],
KD [auth QA],
KDA [auth XF],
KE [auth QA],
KEA [auth Y8],
KF [auth QA],
KFA [auth YA],
KG [auth QA],
KGA [auth YA],
KH [auth QA],
KHA [auth YA],
KI [auth QM],
KIA [auth YA],
KJ [auth RA],
KJA [auth YA],
KK [auth RA],
KKA [auth YA],
KL [auth RA],
KLA [auth YA],
KM [auth RA],
KMA [auth YA],
KN [auth RA],
KNA [auth YA],
KO [auth RA],
KOA [auth YA],
KP [auth RA],
KPA [auth YA],
KQ [auth RA],
KQA [auth YA],
KR [auth RA],
KRA [auth YA],
KS [auth RA],
KSA [auth YA],
KT [auth RA],
KTA [auth YA],
KU [auth RA],
KUA [auth YA],
KV [auth RA],
KVA [auth YA],
KW [auth RA],
KWA [auth YD],
KX [auth RA],
KXA [auth YP],
KY [auth RT],
KZ [auth XA],
LAA [auth XA],
LBA [auth XA],
LCA [auth XA],
LD [auth QA],
LDA [auth XJ],
LE [auth QA],
LEA [auth Y8],
LF [auth QA],
LFA [auth YA],
LG [auth QA],
LGA [auth YA],
LH [auth QA],
LHA [auth YA],
LIA [auth YA],
LJ [auth RA],
LJA [auth YA],
LK [auth RA],
LKA [auth YA],
LL [auth RA],
LLA [auth YA],
LM [auth RA],
LMA [auth YA],
LN [auth RA],
LNA [auth YA],
LO [auth RA],
LOA [auth YA],
LP [auth RA],
LPA [auth YA],
LQ [auth RA],
LQA [auth YA],
LR [auth RA],
LRA [auth YA],
LS [auth RA],
LSA [auth YA],
LT [auth RA],
LTA [auth YA],
LU [auth RA],
LUA [auth YA],
LV [auth RA],
LVA [auth YA],
LW [auth RA],
LWA [auth YD],
LX [auth RA],
LXA [auth YP],
LY [auth RT],
LZ [auth XA],
MAA [auth XA],
MBA [auth XA],
MCA [auth XA],
MD [auth QA],
MDA [auth XK],
ME [auth QA],
MEA [auth Y8],
MF [auth QA],
MFA [auth YA],
MG [auth QA],
MGA [auth YA],
MH [auth QA],
MHA [auth YA],
MI [auth QV],
MIA [auth YA],
MJ [auth RA],
MJA [auth YA],
MK [auth RA],
MKA [auth YA],
ML [auth RA],
MLA [auth YA],
MM [auth RA],
MMA [auth YA],
MN [auth RA],
MNA [auth YA],
MO [auth RA],
MOA [auth YA],
MP [auth RA],
MPA [auth YA],
MQ [auth RA],
MQA [auth YA],
MR [auth RA],
MRA [auth YA],
MS [auth RA],
MSA [auth YA],
MT [auth RA],
MTA [auth YA],
MU [auth RA],
MUA [auth YA],
MV [auth RA],
MVA [auth YA],
MW [auth RA],
MWA [auth YD],
MX [auth RA],
MXA [auth YP],
MY [auth XA],
MZ [auth XA],
NAA [auth XA],
NBA [auth XA],
NCA [auth XA],
ND [auth QA],
NDA [auth XL],
NE [auth QA],
NEA [auth YA],
NF [auth QA],
NFA [auth YA],
NG [auth QA],
NGA [auth YA],
NH [auth QA],
NHA [auth YA],
NI [auth QV],
NIA [auth YA],
NJ [auth RA],
NJA [auth YA],
NK [auth RA],
NKA [auth YA],
NL [auth RA],
NLA [auth YA],
NM [auth RA],
NMA [auth YA],
NN [auth RA],
NNA [auth YA],
NO [auth RA],
NOA [auth YA],
NP [auth RA],
NPA [auth YA],
NQ [auth RA],
NQA [auth YA],
NR [auth RA],
NRA [auth YA],
NS [auth RA],
NSA [auth YA],
NT [auth RA],
NTA [auth YA],
NU [auth RA],
NUA [auth YA],
NV [auth RA],
NVA [auth YA],
NW [auth RA],
NWA [auth YD],
NX [auth RB],
NXA [auth YP],
NY [auth XA],
NZ [auth XA],
OAA [auth XA],
OBA [auth XA],
OCA [auth XA],
OD [auth QA],
ODA [auth XL],
OE [auth QA],
OEA [auth YA],
OF [auth QA],
OFA [auth YA],
OG [auth QA],
OGA [auth YA],
OHA [auth YA],
OI [auth QV],
OIA [auth YA],
OJ [auth RA],
OJA [auth YA],
OK [auth RA],
OKA [auth YA],
OL [auth RA],
OLA [auth YA],
OM [auth RA],
OMA [auth YA],
ON [auth RA],
ONA [auth YA],
OO [auth RA],
OOA [auth YA],
OP [auth RA],
OPA [auth YA],
OQ [auth RA],
OQA [auth YA],
OR [auth RA],
ORA [auth YA],
OS [auth RA],
OSA [auth YA],
OT [auth RA],
OTA [auth YA],
OU [auth RA],
OUA [auth YA],
OV [auth RA],
OVA [auth YA],
OW [auth RA],
OWA [auth YE],
OX [auth RB],
OXA [auth YP],
OY [auth XA],
OZ [auth XA],
PAA [auth XA],
PBA [auth XA],
PCA [auth XA],
PD [auth QA],
PDA [auth XM],
PE [auth QA],
PEA [auth YA],
PF [auth QA],
PFA [auth YA],
PG [auth QA],
PGA [auth YA],
PH [auth QA],
PHA [auth YA],
PI [auth QV],
PIA [auth YA],
PJ [auth RA],
PJA [auth YA],
PK [auth RA],
PKA [auth YA],
PL [auth RA],
PLA [auth YA],
PM [auth RA],
PMA [auth YA],
PN [auth RA],
PNA [auth YA],
PO [auth RA],
POA [auth YA],
PP [auth RA],
PPA [auth YA],
PQ [auth RA],
PQA [auth YA],
PR [auth RA],
PRA [auth YA],
PS [auth RA],
PSA [auth YA],
PT [auth RA],
PTA [auth YA],
PU [auth RA],
PUA [auth YA],
PV [auth RA],
PVA [auth YA],
PW [auth RA],
PWA [auth YE],
PX [auth RB],
PXA [auth YP],
PY [auth XA],
PZ [auth XA],
QAA [auth XA],
QBA [auth XA],
QCA [auth XA],
QD [auth QA],
QE [auth QA],
QEA [auth YA],
QF [auth QA],
QFA [auth YA],
QG [auth QA],
QGA [auth YA],
QH [auth QA],
QHA [auth YA],
QI [auth QV],
QIA [auth YA],
QJ [auth RA],
QJA [auth YA],
QK [auth RA],
QKA [auth YA],
QL [auth RA],
QLA [auth YA],
QM [auth RA],
QMA [auth YA],
QN [auth RA],
QNA [auth YA],
QO [auth RA],
QOA [auth YA],
QP [auth RA],
QPA [auth YA],
QQ [auth RA],
QQA [auth YA],
QR [auth RA],
QRA [auth YA],
QS [auth RA],
QSA [auth YA],
QT [auth RA],
QTA [auth YA],
QU [auth RA],
QUA [auth YA],
QV [auth RA],
QVA [auth YA],
QW [auth RA],
QWA [auth YE],
QX [auth RB],
QXA [auth YQ],
QY [auth XA],
QZ [auth XA],
RAA [auth XA],
RBA [auth XA],
RCA [auth XA],
RD [auth QA],
RDA [auth XV],
RE [auth QA],
REA [auth YA],
RF [auth QA],
RFA [auth YA],
RG [auth QA],
RGA [auth YA],
RH [auth QA],
RHA [auth YA],
RI [auth QV],
RIA [auth YA],
RJ [auth RA],
RJA [auth YA],
RK [auth RA],
RKA [auth YA],
RL [auth RA],
RLA [auth YA],
RM [auth RA],
RMA [auth YA],
RN [auth RA],
RNA [auth YA],
RO [auth RA],
ROA [auth YA],
RP [auth RA],
RPA [auth YA],
RQ [auth RA],
RQA [auth YA],
RR [auth RA],
RRA [auth YA],
RS [auth RA],
RSA [auth YA],
RT [auth RA],
RTA [auth YA],
RU [auth RA],
RUA [auth YA],
RV [auth RA],
RVA [auth YA],
RW [auth RA],
RWA [auth YE],
RX [auth RD],
RXA [auth YQ],
RY [auth XA],
RZ [auth XA],
SAA [auth XA],
SBA [auth XA],
SCA [auth XA],
SD [auth QA],
SDA [auth XV],
SE [auth QA],
SEA [auth YA],
SF [auth QA],
SFA [auth YA],
SG [auth QA],
SGA [auth YA],
SH [auth QA],
SHA [auth YA],
SI [auth QX],
SIA [auth YA],
SJ [auth RA],
SJA [auth YA],
SK [auth RA],
SKA [auth YA],
SL [auth RA],
SLA [auth YA],
SM [auth RA],
SMA [auth YA],
SN [auth RA],
SNA [auth YA],
SO [auth RA],
SOA [auth YA],
SP [auth RA],
SPA [auth YA],
SQ [auth RA],
SQA [auth YA],
SR [auth RA],
SRA [auth YA],
SS [auth RA],
SSA [auth YA],
ST [auth RA],
STA [auth YA],
SU [auth RA],
SUA [auth YA],
SV [auth RA],
SVA [auth YA],
SW [auth RA],
SWA [auth YE],
SX [auth RD],
SXA [auth YQ],
SY [auth XA],
SZ [auth XA],
TAA [auth XA],
TBA [auth XA],
TCA [auth XA],
TD [auth QA],
TDA [auth XV],
TE [auth QA],
TEA [auth YA],
TF [auth QA],
TFA [auth YA],
TG [auth QA],
TGA [auth YA],
TH [auth QA],
THA [auth YA],
TIA [auth YA],
TJ [auth RA],
TJA [auth YA],
TK [auth RA],
TKA [auth YA],
TL [auth RA],
TLA [auth YA],
TM [auth RA],
TMA [auth YA],
TN [auth RA],
TNA [auth YA],
TO [auth RA],
TOA [auth YA],
TP [auth RA],
TPA [auth YA],
TQ [auth RA],
TQA [auth YA],
TR [auth RA],
TRA [auth YA],
TS [auth RA],
TSA [auth YA],
TT [auth RA],
TTA [auth YA],
TU [auth RA],
TUA [auth YA],
TV [auth RA],
TVA [auth YA],
TW [auth RA],
TWA [auth YE],
TX [auth RE],
TXA [auth YQ],
TY [auth XA],
TZ [auth XA],
UAA [auth XA],
UBA [auth XA],
UCA [auth XA],
UD [auth QA],
UDA [auth XV],
UE [auth QA],
UEA [auth YA],
UF [auth QA],
UFA [auth YA],
UG [auth QA],
UGA [auth YA],
UH [auth QA],
UHA [auth YA],
UI [auth R0],
UIA [auth YA],
UJ [auth RA],
UJA [auth YA],
UK [auth RA],
UKA [auth YA],
UL [auth RA],
ULA [auth YA],
UM [auth RA],
UMA [auth YA],
UN [auth RA],
UNA [auth YA],
UO [auth RA],
UOA [auth YA],
UP [auth RA],
UPA [auth YA],
UQ [auth RA],
UQA [auth YA],
UR [auth RA],
URA [auth YA],
US [auth RA],
USA [auth YA],
UT [auth RA],
UTA [auth YA],
UU [auth RA],
UUA [auth YA],
UV [auth RA],
UVA [auth YA],
UW [auth RA],
UWA [auth YF],
UX [auth RE],
UXA [auth YR],
UY [auth XA],
UZ [auth XA],
VAA [auth XA],
VBA [auth XA],
VCA [auth XA],
VD [auth QA],
VDA [auth XV],
VE [auth QA],
VEA [auth YA],
VF [auth QA],
VFA [auth YA],
VG [auth QA],
VGA [auth YA],
VH [auth QA],
VHA [auth YA],
VI [auth R1],
VIA [auth YA],
VJ [auth RA],
VJA [auth YA],
VK [auth RA],
VKA [auth YA],
VL [auth RA],
VLA [auth YA],
VM [auth RA],
VMA [auth YA],
VN [auth RA],
VNA [auth YA],
VO [auth RA],
VOA [auth YA],
VP [auth RA],
VPA [auth YA],
VQ [auth RA],
VQA [auth YA],
VR [auth RA],
VRA [auth YA],
VS [auth RA],
VSA [auth YA],
VT [auth RA],
VTA [auth YA],
VU [auth RA],
VUA [auth YA],
VV [auth RA],
VVA [auth YA],
VW [auth RA],
VWA [auth YF],
VX [auth RE],
VXA [auth YR],
VY [auth XA],
VZ [auth XA],
WAA [auth XA],
WBA [auth XA],
WCA [auth XA],
WD [auth QA],
WDA [auth XV],
WE [auth QA],
WEA [auth YA],
WF [auth QA],
WFA [auth YA],
WG [auth QA],
WGA [auth YA],
WH [auth QA],
WHA [auth YA],
WI [auth R5],
WIA [auth YA],
WJ [auth RA],
WJA [auth YA],
WK [auth RA],
WKA [auth YA],
WL [auth RA],
WLA [auth YA],
WM [auth RA],
WMA [auth YA],
WN [auth RA],
WNA [auth YA],
WO [auth RA],
WOA [auth YA],
WP [auth RA],
WPA [auth YA],
WQ [auth RA],
WQA [auth YA],
WR [auth RA],
WRA [auth YA],
WS [auth RA],
WSA [auth YA],
WT [auth RA],
WTA [auth YA],
WU [auth RA],
WUA [auth YA],
WV [auth RA],
WVA [auth YA],
WW [auth RA],
WWA [auth YF],
WX [auth RE],
WXA [auth YT],
WY [auth XA],
WZ [auth XA],
XAA [auth XA],
XBA [auth XA],
XCA [auth XA],
XD [auth QA],
XDA [auth XV],
XE [auth QA],
XEA [auth YA],
XF [auth QA],
XFA [auth YA],
XG [auth QA],
XGA [auth YA],
XH [auth QA],
XHA [auth YA],
XI [auth R8],
XIA [auth YA],
XJ [auth RA],
XJA [auth YA],
XK [auth RA],
XKA [auth YA],
XL [auth RA],
XLA [auth YA],
XM [auth RA],
XMA [auth YA],
XN [auth RA],
XNA [auth YA],
XO [auth RA],
XOA [auth YA],
XP [auth RA],
XPA [auth YA],
XQ [auth RA],
XQA [auth YA],
XR [auth RA],
XRA [auth YA],
XS [auth RA],
XSA [auth YA],
XT [auth RA],
XTA [auth YA],
XU [auth RA],
XUA [auth YA],
XV [auth RA],
XVA [auth YA],
XW [auth RA],
XWA [auth YF],
XX [auth RE],
XXA [auth YT],
XY [auth XA],
XZ [auth XA],
YAA [auth XA],
YBA [auth XA],
YD [auth QA],
YDA [auth XX],
YE [auth QA],
YEA [auth YA],
YF [auth QA],
YFA [auth YA],
YG [auth QA],
YGA [auth YA],
YH [auth QA],
YHA [auth YA],
YI [auth R9],
YIA [auth YA],
YJ [auth RA],
YJA [auth YA],
YK [auth RA],
YKA [auth YA],
YL [auth RA],
YLA [auth YA],
YM [auth RA],
YMA [auth YA],
YN [auth RA],
YNA [auth YA],
YO [auth RA],
YOA [auth YA],
YP [auth RA],
YPA [auth YA],
YQ [auth RA],
YQA [auth YA],
YR [auth RA],
YRA [auth YA],
YS [auth RA],
YSA [auth YA],
YT [auth RA],
YTA [auth YA],
YU [auth RA],
YUA [auth YA],
YV [auth RA],
YVA [auth YA],
YW [auth RA],
YWA [auth YF],
YX [auth RE],
YXA [auth YU],
YY [auth XA],
YZ [auth XA],
ZAA [auth XA],
ZBA [auth XA],
ZCA [auth XA],
ZD [auth QA],
ZDA [auth Y0],
ZE [auth QA],
ZEA [auth YA],
ZF [auth QA],
ZFA [auth YA],
ZG [auth QA],
ZGA [auth YA],
ZH [auth QA],
ZHA [auth YA],
ZI [auth RA],
ZIA [auth YA],
ZJ [auth RA],
ZJA [auth YA],
ZK [auth RA],
ZKA [auth YA],
ZL [auth RA],
ZLA [auth YA],
ZM [auth RA],
ZMA [auth YA],
ZN [auth RA],
ZNA [auth YA],
ZO [auth RA],
ZOA [auth YA],
ZP [auth RA],
ZPA [auth YA],
ZQ [auth RA],
ZQA [auth YA],
ZR [auth RA],
ZRA [auth YA],
ZS [auth RA],
ZSA [auth YA],
ZT [auth RA],
ZTA [auth YA],
ZU [auth RA],
ZUA [auth YA],
ZV [auth RA],
ZVA [auth YA],
ZW [auth RA],
ZWA [auth YG],
ZX [auth RE],
ZXA [auth YV],
ZY [auth XA],
ZZ [auth XA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 211.26α = 90
b = 452.33β = 90
c = 626.52γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM093278
National Science Foundation (NSF, United States)United StatesCHE 1808711

Revision History  (Full details and data files)

  • Version 1.0: 2020-06-24
    Type: Initial release
  • Version 1.1: 2020-07-01
    Changes: Database references
  • Version 1.2: 2020-07-15
    Changes: Database references
  • Version 1.3: 2020-07-29
    Changes: Database references, Derived calculations
  • Version 1.4: 2023-10-11
    Changes: Data collection, Database references, Refinement description
  • Version 2.0: 2024-05-29
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary