Download MendeleyCrystal Structure Analysis of PIN1
Seo, H.-S., Dhe-Paganon, S.To be published.
6O34
Crystal Structure Analysis of PIN1
- PDB DOI: https://doi.org/10.2210/pdb6O34/pdb
- Classification: ISOMERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-02-25 Released: 2020-02-26
- Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.251
- R-Value Work: 0.203
- R-Value Observed: 0.206
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | 163 | Homo sapiens | Mutation(s): 0 Gene Names: PIN1 EC: 5.2.1.8 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13526 (Homo sapiens) Explore Q13526 Go to UniProtKB: Q13526 | |||||
PHAROS: Q13526 GTEx: ENSG00000127445 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13526 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| peptide | 6 | Homo sapiens | Mutation(s): 0 |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2PE Query on 2PE | C [auth A] | NONAETHYLENE GLYCOL C18 H38 O10 YZUUTMGDONTGTN-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CIR Query on CIR | B | L-PEPTIDE LINKING | C6 H13 N3 O3 |  | ARG |
| MEA Query on MEA | B | L-PEPTIDE LINKING | C10 H13 N O2 |  | PHE |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.251
- R-Value Work: 0.203
- R-Value Observed: 0.206
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.951 | α = 90 |
| b = 48.951 | β = 90 |
| c = 137.421 | γ = 90 |
| Software Name | Purpose |
|---|---|
| xia2 | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| xia2 | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-02-26 Deposition Author(s): Seo, H.-S., Dhe-Paganon, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2020-02-26
Type: Initial release - Version 1.1: 2020-03-04
Changes: Database references, Source and taxonomy, Structure summary - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description - Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Derived calculations
