6NX4 | pdb_00006nx4

Structure of the C-terminal Helical Repeat Domain of Eukaryotic Elongation Factor 2 Kinase (eEF-2K)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Solution Structure of the Carboxy-Terminal Tandem Repeat Domain of Eukaryotic Elongation Factor 2 Kinase and Its Role in Substrate Recognition.

Piserchio, A.Will, N.Giles, D.H.Hajredini, F.Dalby, K.N.Ghose, R.

(2019) J Mol Biology 431: 2700-2717

  • DOI: https://doi.org/10.1016/j.jmb.2019.05.019
  • Primary Citation Related Structures: 
    6NX4

  • PubMed Abstract: 

    Eukaryotic elongation factor 2 kinase (eEF-2K), an atypical calmodulin-activated protein kinase, regulates translational elongation by phosphorylating its substrate, eukaryotic elongation factor 2 (eEF-2), thereby reducing its affinity for the ribosome. The activation and activity of eEF-2K are critical for survival under energy-deprived conditions and is implicated in a variety of essential physiological processes. Previous biochemical experiments have indicated that the binding site for the substrate eEF-2 is located in the C-terminal domain of eEF-2K, a region predicted to harbor several α-helical repeats. Here, using NMR methodology, we have determined the solution structure of a C-terminal fragment of eEF-2K, eEF-2K 562-725 that encodes two α-helical repeats. The structure of eEF-2K 562-725 shows signatures characteristic of TPR domains and of their SEL1-like sub-family. Furthermore, using the analyses of NMR spectral perturbations and ITC measurements, we have localized the eEF-2 binding site on eEF-2K 562-725 . We find that eEF-2K 562-725 engages eEF-2 with an affinity comparable to that of the full-length enzyme. Furthermore, eEF-2K 562-725 is able to inhibit the phosphorylation of eEF-2 by full-length eEF-2K in trans. Our present studies establish that eEF-2K 562-725 encodes the major elements necessary to enable the eEF-2K/eEF-2 interactions.


  • Organizational Affiliation
    • Department of Chemistry and Biochemistry, The City College of New York, NewYork, NY 10031, USA.

Macromolecule Content 

  • Total Structure Weight: 18.89 kDa 
  • Atom Count: 1,319 
  • Modeled Residue Count: 167 
  • Deposited Residue Count: 167 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Eukaryotic elongation factor 2 kinase167Homo sapiensMutation(s): 0 
Gene Names: EEF2K
EC: 2.7.11.20
UniProt & NIH Common Fund Data Resources
Find proteins for O00418 (Homo sapiens)
Explore O00418 
Go to UniProtKB:  O00418
PHAROS:  O00418
GTEx:  ENSG00000103319 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO00418
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesGM123252

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-29
    Type: Initial release
  • Version 1.1: 2019-07-10
    Changes: Data collection, Database references
  • Version 1.2: 2019-12-18
    Changes: Author supporting evidence, Data collection
  • Version 1.3: 2024-05-01
    Changes: Data collection, Database references