Download MendeleycAMP-dependent protein kinase A in complex with RyR2 peptide (2799-2810)
Haji-Ghassemi, O., Yuchi, Z., van Petegem, F.(2019) Mol Cell
6MM5
Catalytic subunit of cAMP-dependent protein kinase A in complex with RyR2 peptide (2799-2810)
- PDB DOI: https://doi.org/10.2210/pdb6MM5/pdb
- Classification: TRANSFERASE/PROTEIN BINDING
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-09-29 Released: 2019-05-08
- Funding Organization(s): Canadian Institutes of Health Research (CIHR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.227
- R-Value Work: 0.180
- R-Value Observed: 0.183
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cAMP-dependent protein kinase catalytic subunit alpha | A [auth E] | 339 | Mus musculus | Mutation(s): 0 Gene Names: Prkaca, Pkaca EC: 2.7.11.11 |  |
UniProt | |||||
Find proteins for P05132 (Mus musculus) Explore P05132 Go to UniProtKB: P05132 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05132 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ryanodine receptor 2 | B [auth C] | 12 | Mus musculus | Mutation(s): 0 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for E9Q401 (Mus musculus) Explore E9Q401 Go to UniProtKB: E9Q401 | |||||
IMPC: MGI:99685 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E9Q401 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANP Query on ANP | D [auth E] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N |  | ||
| EDO Query on EDO | E [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A [auth E] | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
| TPO Query on TPO | A [auth E] | L-PEPTIDE LINKING | C4 H10 N O6 P |  | THR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.227
- R-Value Work: 0.180
- R-Value Observed: 0.183
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.861 | α = 90 |
| b = 74.881 | β = 90 |
| c = 98.561 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-05-08 Deposition Author(s): van Petegem, F., Haji-Ghassemi, O.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Canadian Institutes of Health Research (CIHR) | Canada | PJT 153305 |
Revision History (Full details and data files)
- Version 1.0: 2019-05-08
Type: Initial release - Version 1.1: 2020-01-08
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2024-11-20
Changes: Structure summary
