6M6G | pdb_00006m6g

Structure of HSV2 viron capsid portal vertex

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history. 

Literature

Structures of the portal vertex reveal essential protein-protein interactions for Herpesvirus assembly and maturation.

Wang, N., Chen, W., Zhu, L., Zhu, D., Feng, R., Wang, J., Zhu, B., Zhang, X., Chen, X., Liu, X., Yan, R., Ni, D., Zhou, G.G., Liu, H., Rao, Z., Wang, X.

(2020) Protein Cell 11: 366-373

  • DOI: https://doi.org/10.1007/s13238-020-00711-z
  • Primary Citation Related Structures: 
    6M6G, 6M6H, 6M6I
    • Organizational Affiliation: 
    • CAS Key Laboratory of Infection and Immunity, National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China.

Macromolecule Content 

  • Total Structure Weight: 1,965.92 kDa 
  • Atom Count: 78,731 
  • Modeled Residue Count: 10,590 
  • Deposited Residue Count: 18,305 
  • Unique protein chains: 9

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Major capsid protein1,374Human alphaherpesvirus 2Mutation(s): 0 
UniProt
Find proteins for P89442 (Human herpesvirus 2 (strain HG52))
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Small capsomere-interacting protein112Human alphaherpesvirus 2Mutation(s): 0 
UniProt
Find proteins for P89458 (Human herpesvirus 2 (strain HG52))
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Triplex capsid protein 2H [auth K],
K [auth O]		318Human alphaherpesvirus 2Mutation(s): 0 
UniProt
Find proteins for P89441 (Human herpesvirus 2 (strain HG52))
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
coiled coilsI [auth L]84Human alphaherpesvirus 2Mutation(s): 0 
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Coiled coilsL [auth P]87Human alphaherpesvirus 2Mutation(s): 0 
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Triplex capsid protein 1N [auth S]466Human alphaherpesvirus 2Mutation(s): 0 
UniProt
Find proteins for P22486 (Human herpesvirus 2 (strain G))
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid vertex component 1R [auth k]702Human alphaherpesvirus 2Mutation(s): 0 
UniProt
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid vertex component 2S [auth l],
T [auth m]		585Human alphaherpesvirus 2Mutation(s): 0 
UniProt
Find proteins for P89448 (Human herpesvirus 2 (strain HG52))
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Reference Sequence
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Large tegument protein deneddylaseU [auth n],
V [auth o]		3,122Human alphaherpesvirus 2Mutation(s): 0 
EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data)
UniProt
Find proteins for P89459 (Human herpesvirus 2 (strain HG52))
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-24
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Database references, Derived calculations, Structure summary