6LUS | pdb_00006lus

Crystal structure of the Mengla Virus VP30 C-terminal domain

• PDB DOI: https://doi.org/10.2210/pdb6LUS/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Dianlovirus menglaense
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-01-30 Released: 2020-12-02 
• Deposition Author(s): Dong, S.S., Wen, K.N., Chu, H.G., Wang, C.H., Qin, X.C.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 
  0.182 (Depositor), 0.182 (DCC) 
• R-Value Work: 
  0.177 (Depositor), 0.177 (DCC) 

Starting Model: experimental

Literature

Crystal structure of the Mengla virus VP30 C-terminal domain.

Dong, S., Wen, K., Chu, H., Li, H., Yu, Q., Wang, C., Qin, X.

(2020) Biochem Biophys Res Commun 525: 392-397

• PubMed: 32093889 
• DOI: https://doi.org/10.1016/j.bbrc.2020.02.089
• Primary Citation Related Structures: 
  6LUS


• PubMed Abstract: 
  

  The family Filoviridae contains many important human viruses, including Marburg virus (MARV) and Ebola virus (EBOV). Měnglà virus (MLAV), a newly discovered filovirus, is considered a potential human pathogen. The VP30 C-terminal domain (CTD) of these filoviruses plays an essential role in virion assembly. In common with other filoviruses, MLAV VP30 CTD mainly exists as a dimer in solution. In this work, we determined the crystal structure of recombinant MLAV VP30 CTD monomer, verifying that C-terminal helix-7 (H7) is critical for the dimerization process. This study provides a preliminary model for investigation of MLAV VP30 CTD as an anti-filovirus drug development target.

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Organizational Affiliation: 
• School of Biological Science and Technology, University of Jinan, Jinan, China. Electronic address: [e-mail].
School of Biological Science and Technology, University of Jinan, Jinan, China.
School of Biological Science and Technology, University of Jinan, Jinan, China. Electronic address: [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 14.74 kDa 
• Atom Count: 1,145 
• Modeled Residue Count: 127 
• Deposited Residue Count: 133 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Minor nucleoprotein VP30	A	133	Dianlovirus menglaense	Mutation(s): 0  Gene Names: VP30
UniProt
Find proteins for A0A3S8UVN5 (Dianlovirus menglaense) Explore A0A3S8UVN5  Go to UniProtKB:  A0A3S8UVN5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free:  0.182 (Depositor), 0.182 (DCC) 
• R-Value Work:  0.177 (Depositor), 0.177 (DCC) 

Space Group: P 3₂ 1 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.886	α = 90
b = 73.886	β = 90
c = 53.405	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2020-12-02 
Deposition Author(s): Dong, S.S., Wen, K.N., Chu, H.G., Wang, C.H., Qin, X.C.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2020-12-02
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Database references, Derived calculations, Refinement description