6LS3

cubic-shaped crystal of TmFtn mutant-T4FY stimulated by Mg

PDB DOI: https://doi.org/10.2210/pdb6LS3/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Thermotoga maritima
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-01-16 Released: 2021-01-20
Deposition Author(s): Zhao, G., Zhang, X.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free: 0.243
R-Value Work: 0.187
R-Value Observed: 0.190

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

cubic-shaped crystal of TmFtn mutant-T4FY stimulated by Mg

Zhao, G., Zhang, X.

To be published.

Macromolecule Content

Total Structure Weight: 156.2 kDa
Atom Count: 10,977
Modelled Residue Count: 1,310
Deposited Residue Count: 1,312
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin	A [auth B] B [auth E] C [auth A] D [auth C] E [auth D] A [auth B], B [auth E], C [auth A], D [auth C], E [auth D], F, G, H	164	Thermotoga maritima	Mutation(s): 0 Gene Names: TM_1128 EC: 1.16.3.2
UniProt
Find proteins for Q9X0L2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0L2 Go to UniProtKB: Q9X0L2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9X0L2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain L [auth E] SDF format, chain M [auth E] SDF format, chain N [auth A] SDF format, chain O [auth A] SDF format, chain Q [auth C] SDF format, chain R [auth C] SDF format, chain S [auth D] SDF format, chain T [auth D] SDF format, chain V [auth F] SDF format, chain W [auth F] SDF format, chain X [auth G] SDF format, chain Y [auth G] SDF format, chain Z [auth H] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain L [auth E] MOL2 format, chain M [auth E] MOL2 format, chain N [auth A] MOL2 format, chain O [auth A] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C] MOL2 format, chain S [auth D] MOL2 format, chain T [auth D] MOL2 format, chain V [auth F] MOL2 format, chain W [auth F] MOL2 format, chain X [auth G] MOL2 format, chain Y [auth G] MOL2 format, chain Z [auth H] mmCIF format, chain I [auth B] mmCIF format, chain J [auth B] mmCIF format, chain L [auth E] mmCIF format, chain M [auth E] mmCIF format, chain N [auth A] mmCIF format, chain O [auth A] mmCIF format, chain Q [auth C] mmCIF format, chain R [auth C] mmCIF format, chain S [auth D] mmCIF format, chain T [auth D] mmCIF format, chain V [auth F] mmCIF format, chain W [auth F] mmCIF format, chain X [auth G] mmCIF format, chain Y [auth G] mmCIF format, chain Z [auth H]	I [auth B] J [auth B] L [auth E] M [auth E] N [auth A] I [auth B], J [auth B], L [auth E], M [auth E], N [auth A], O [auth A], Q [auth C], R [auth C], S [auth D], T [auth D], V [auth F], W [auth F], X [auth G], Y [auth G], Z [auth H]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Focus chain J [auth B] Focus chain L [auth E] Focus chain M [auth E] Focus chain N [auth A] Focus chain O [auth A] Focus chain Q [auth C] Focus chain R [auth C] Focus chain S [auth D] Focus chain T [auth D] Focus chain V [auth F] Focus chain W [auth F] Focus chain X [auth G] Focus chain Y [auth G] Focus chain Z [auth H] Interactions & Density Focus chain I [auth B] Focus chain J [auth B] Focus chain L [auth E] Focus chain M [auth E] Focus chain N [auth A] Focus chain O [auth A] Focus chain Q [auth C] Focus chain R [auth C] Focus chain S [auth D] Focus chain T [auth D] Focus chain V [auth F] Focus chain W [auth F] Focus chain X [auth G] Focus chain Y [auth G] Focus chain Z [auth H]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain AA [auth H] SDF format, chain K [auth B] SDF format, chain P [auth A] SDF format, chain U [auth D] MOL2 format, chain AA [auth H] MOL2 format, chain K [auth B] MOL2 format, chain P [auth A] MOL2 format, chain U [auth D] mmCIF format, chain AA [auth H] mmCIF format, chain K [auth B] mmCIF format, chain P [auth A] mmCIF format, chain U [auth D]	AA [auth H], K [auth B], P [auth A], U [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain AA [auth H] Focus chain K [auth B] Focus chain P [auth A] Focus chain U [auth D] Interactions & Density Focus chain AA [auth H] Focus chain K [auth B] Focus chain P [auth A] Focus chain U [auth D]