6LP3 | pdb_00006lp3

Structural basis and functional analysis epo1-bem3p complex for bud growth

PDB DOI: https://doi.org/10.2210/pdb6LP3/pdb

Classification: CELL ADHESION
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-01-08 Released: 2021-04-28
Deposition Author(s): Wang, J., Li, L., Ming, Z.H., Wu, L.J., Yan, L.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.55 Å
R-Value Free:
0.398 (Depositor), 0.434 (DCC)
R-Value Work:
0.340 (Depositor), 0.359 (DCC)
R-Value Observed:
0.343 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6LP3

This is version 1.1 of the entry. See complete history.

Literature

Structural basis and functional analysis epo1-bem3p complex for bud growth

Wang, J.

To be published.

Macromolecule Content

Total Structure Weight: 112.3 kDa
Atom Count: 4,661
Modeled Residue Count: 566
Deposited Residue Count: 990
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein YMR124W	A, B, D, E	198	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: YMR124W, YM8564.06
UniProt
Find proteins for P39523 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39523 Go to UniProtKB: P39523
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P39523
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GTPase-activating protein BEM3	C, F	99	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: BEM3, YPL115C, LPH12C
UniProt
Find proteins for P32873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32873 Go to UniProtKB: P32873
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P32873
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.55 Å
R-Value Free: 0.398 (Depositor), 0.434 (DCC)
R-Value Work: 0.340 (Depositor), 0.359 (DCC)
R-Value Observed: 0.343 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.405	α = 90
b = 119.405	β = 90
c = 144.575	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
AutoSol	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-04-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-04-28
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.