6LOH | pdb_00006loh

Crystal structure of the catalytic domain of human ubiquitin ligase AREL1

PDB DOI: https://doi.org/10.2210/pdb6LOH/pdb

Classification: LIGASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-01-05 Released: 2021-01-20
Deposition Author(s): Chen, Z.Z., Li, Z.H., Shang, G.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.21 Å
R-Value Free:
0.225 (Depositor), 0.198 (DCC)
R-Value Work:
0.211 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6LOH

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the catalytic domain of human ubiquitin ligase AREL1

Li, Z.H., Shang, G.H., Tang, C.J., Tian, Z.Z., Wu, W., Chen, Z.Z.

(2020) PROG BIOCHEM BIOPHYS

DOI: https://doi.org/10.16476/j.pibb.2020.0008

Macromolecule Content

Total Structure Weight: 135.08 kDa
Atom Count: 8,990
Modeled Residue Count: 1,120
Deposited Residue Count: 1,167
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Apoptosis-resistant E3 ubiquitin protein ligase 1	A, B, C	389	Homo sapiens	Mutation(s): 0 Gene Names: AREL1, KIAA0317 EC: 2.3.2.26
UniProt & NIH Common Fund Data Resources
Find proteins for O15033 (Homo sapiens) Explore O15033 Go to UniProtKB: O15033
PHAROS: O15033 GTEx: ENSG00000119682
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O15033
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.21 Å
R-Value Free: 0.225 (Depositor), 0.198 (DCC)
R-Value Work: 0.211 (Depositor)

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 150.231	α = 90
b = 150.231	β = 90
c = 342.645	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-01-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-01-20
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.