Download MendeleyCrystal structure of PCB4scFv(hN56D) in complex with PCB#126
Nakamura, T., Morioka, H.To be published.
6LFW
Crystal structure of PCB4scFv(hN56D) in complex with PCB#126
- PDB DOI: https://doi.org/10.2210/pdb6LFW/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-12-03 Released: 2020-12-09
- Funding Organization(s): Ministry of Education, Culture, Sports, Science and Technology (Japan)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.41 Å
- R-Value Free: 0.155
- R-Value Work: 0.126
- R-Value Observed: 0.128
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PCB4scFv(hN56D) | 253 | Mus musculus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| OMF (Subject of Investigation/LOI) Query on OMF | B [auth A] | 1,2,3-tris(chloranyl)-5-(3-chloranyl-4-methoxy-phenyl)benzene C13 H8 Cl4 O ZPWFINDBNFLFDF-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.41 Å
- R-Value Free: 0.155
- R-Value Work: 0.126
- R-Value Observed: 0.128
- Space Group: I 4
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.21 | α = 90 |
| b = 92.21 | β = 90 |
| c = 51.55 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-12-09 Deposition Author(s): Nakamura, T., Yamagata, Y., Morioka, H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | -- |
Revision History (Full details and data files)
- Version 1.0: 2020-12-09
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
